HOOMD-blue workshop

This repository contains Jupyter notebooks with notes and exercises for the HOOMD-blue workshop.

You can run this code in the cloud, access it with a web browser from any platform on:

• Google Colab (requires a Google account):
  • To open a new notebook, choose a link below the notebook in Google Colab.
    • Introducing molecular dynamics
    • Additional optional topics:
      • Introducing polymers/bonds
      • Introducing binary mixtures
      • Cooling a system
      • (Previous session:) Introducing HOOMD-blue
    • You can save your modified notebooks to your Google Drive.
• Binder:
  • Follow this link to start JupyterLab on Binder
  • Double-click on a notebook in the left panel to open it.
  • You can save your modified notebooks locally.

You can run these notebooks locally in a conda environment built from environment.yml.

• Supported platforms: linux-64, osx-64, and osx-arm64.
• Supported conda installations: mambaforge, miniforge, and miniconda.