Collection of custom scripts used in Single Cell analyses

Source a script with devtools::source_url("https://raw.githubusercontent.com/asabjorklund/single_cell_R_scripts/main/<script_name>.R")

• misc_seurat.R - Contains functions for running seurat pipeline, DEG testing etc.
• top_expressed_genes.R - Boxplot with top expressed genes from a Seurat object
• overlap_phyper_v2.R - Heatmap with overlap of two lists, with coloring by phyper p-value.
• vdj_analysis.R - Parsing of cellranger VDJ data
• clonal_diversity.R - Some functions for calculating diversity scores for clonal distributions.