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1. virnet virnet Public

   VirNet: A deep attention model for viral reads identification

   Jupyter Notebook 30 4

2. cellassign cellassign Public

   Forked from Irrationone/cellassign

   Automated, probabilistic assignment of cell types in scRNA-seq data

   R

3. nomacs-plugins nomacs-plugins Public

   Forked from nomacs/nomacs-plugins

   3dparty plugins for nomacs

   C++

4. STdeconvolve STdeconvolve Public

   Forked from JEFworks-Lab/STdeconvolve

   Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data

   R

5. MorrissyLab/spOT-NMF MorrissyLab/spOT-NMF Public

   Optimal Transport-Based Matrix Factorization for Accurate Deconvolution in Spatial Transcriptomics

   Python 4

6. MorrissyLab/XenoSignal MorrissyLab/XenoSignal Public

   XenoSignal: Investigating Intra- and Inter-Species Ligand–Receptor Interactions Using AlphaFold3

   Jupyter Notebook