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SettingsFiles
SettingsFiles
 
 
shell-scripts
shell-scripts
 
 
.Rhistory
.Rhistory
 
 
BioNet-and-graphite-network-analysis.R
BioNet-and-graphite-network-analysis.R
 
 
Cuffdiff-Secondary-Analysis-BIOL607.Rmd
Cuffdiff-Secondary-Analysis-BIOL607.Rmd
 
 
Cuffdiff-Secondary-Analysis-Organized-BIOL607-Project.Rmd
Cuffdiff-Secondary-Analysis-Organized-BIOL607-Project.Rmd
 
 
DecisionTrees.R
DecisionTrees.R
 
 
EGSEAWorkflow.R
EGSEAWorkflow.R
 
 
EGSEAWorkflow.Rmd
EGSEAWorkflow.Rmd
 
 
README.RNA-Seq-notes.md
README.RNA-Seq-notes.md
 
 
README.md
README.md
 
 
RNA-Seq-Decision-Trees.R
RNA-Seq-Decision-Trees.R
 
 
S_meliloti_GO_analysis_rsubread-data.R
S_meliloti_GO_analysis_rsubread-data.R
 
 
Tailor RNA-Seq Pipeline R Code.Rmd
Tailor RNA-Seq Pipeline R Code.Rmd
 
 
Tailor-CharacteristicSubnetworkDiscovery.Rmd
Tailor-CharacteristicSubnetworkDiscovery.Rmd
 
 
Tailor-RNA-Seq-Analysis-Cuffdiff-EdgeR-Limma.Rmd
Tailor-RNA-Seq-Analysis-Cuffdiff-EdgeR-Limma.Rmd
 
 
The_Tailor_RNA-Seq_Diff-Expr_Pipeline_for_Biomarker_Discovery.Thesis.Rmd
The_Tailor_RNA-Seq_Diff-Expr_Pipeline_for_Biomarker_Discovery.Thesis.Rmd
 
 
Urine1 RNA-Seq Differential Expression Notebook.Rmd
Urine1 RNA-Seq Differential Expression Notebook.Rmd
 
 
Voom-edgeR-DESeq-bayseq-examples.R
Voom-edgeR-DESeq-bayseq-examples.R
 
 
bionet.R
bionet.R
 
 
caret.Rmd
caret.Rmd
 
 
correlation_matrix.R
correlation_matrix.R
 
 
cummeRbund-golplots-igraph.R
cummeRbund-golplots-igraph.R
 
 
cummeRbund.R
cummeRbund.R
 
 
deseq-vs-edger.R
deseq-vs-edger.R
 
 
edgeR-glm-analysis.R
edgeR-glm-analysis.R
 
 
glmqlftest_edger.R
glmqlftest_edger.R
 
 
gmt2gs.R
gmt2gs.R
 
 
go.R
go.R
 
 
goplots.R
goplots.R
 
 
human-interactome-network-analysis.R
human-interactome-network-analysis.R
 
 
limmaWorkflow.Rmd
limmaWorkflow.Rmd
 
 
pathview.R
pathview.R
 
 
pathview.retry.R
pathview.retry.R
 
 
plotNetworksRcytoscape.R
plotNetworksRcytoscape.R
 
 
tailor-network-script-using-igraph.R
tailor-network-script-using-igraph.R
 
 
tcell-net.R
tcell-net.R
 
 
vennDiagram_leavout.R
vennDiagram_leavout.R
 
 

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Gene-Expression-SecondaRy-Analysis

Repository of R scripts for analysis of gene expression data in either FPKM matrix or count matrix format.

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Repository of R scripts for analysis of gene expression data

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gene-expression network-analysis gsea

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