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@Workflomics

Workflomics

Projects tailored for automated creation and benchmarking of workflows in life sciences .

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Hi, welcome to the Workflomics project! 👋

Workflomics is a platform used to help bioinformaticians to automatically generate and compare computational workflows!

The following video explains Workflomics in 10 minutes:

Workflomics - Youtube video

Useful links:

Architecture

architecture_workflomics
Architecture Overview of the Workflomics Platform.

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  1. workflomics-frontend workflomics-frontend Public

    Web interface for automated generation and benchmarking of computational workflows in bioinformatics.

    TypeScript 4 5

  2. restape restape Public

    RESTful API for the APE library

    Java 1 2

  3. ape ape Public

    Tool for automated generation of computational workflows.

    Java 20 10

  4. tools-and-domains tools-and-domains Public

    Containers to package the required sofware for executing CWL workflows

    Common Workflow Language 4

  5. workflomics-benchmarker workflomics-benchmarker Public

    Library used to execute workflows (in CWL) and benchmark them as part of the Workflomics.

    Python

  6. pubmetric pubmetric Public

    Library for benchmarking bioinformatics workflows using bibliographic networks.

    Jupyter Notebook 1 1

Repositories

Showing 10 of 16 repositories

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