Reproducible quarto manuscript for "Does the Brain’s E:I Balance Really Shape Long-Range Temporal Correlations? Lessons Learned from 3T MRI"

This is a repo for generating our manuscript "Does the Brain’s E:I Balance Really Shape Long-Range Temporal Correlations? Lessons Learned from 3T MRI"

The best way to view this manuscript is at weberlab.github.io/EI_Hurst_Manuscript/

There you can view in HTML, or create the PDF or MSWord versions.

Raw code

The raw code to create the manuscript is in index.qmd

Stats were produced in notebooks/EI_Hurst_Revised.qmd and some figures in notebooks/Figure.ipynb

Steps to reproduce

Clone this repo

gh repo clone WeberLab/EI_Hurst

rv package manager for r

You will find an rproject.toml file in the main directory and the notebooks directory. These define the R version and the package to install.

You will need to install rv

Then run:

rv init .
rv sync

And do the same in Notebooks:

cd notebooks
rv init .
rv sync

uv for Figures.ipynb

cd notebooks
uv sync

Quarto

Now you can first preview, then render

quarto preview --no-browser #You don't need this flag; it just suppresses the browser from opening
quarto render

If you get some broken figure links, run quarto preview again