JUMP Pilot Image Data Downloader and Loader#1
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MattsonCam merged 15 commits intomainfrom Apr 29, 2026
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added 9 commits
April 27, 2026 11:01
Document how to install the package directly from the GitHub repository using pip with the `@main` ref. This makes it clear how to install the latest code from the default branch without relying on a PyPI release.
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d33bs
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Apr 29, 2026
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| """JUMP pilot dataset metadata and download utilities.""" | |||
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| from . import image_downloader, image_metadata | |||
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Instead of placing this at a lower level, consider adding these imports to the top-level package and using that as a bearing of what is made available within the package (and any sub-packages like this one).
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Good idea, I've implement this
added 5 commits
April 29, 2026 09:10
Use `--frozen` for both `uv sync` and `uv run` in GitHub Actions. This ensures CI strictly uses the committed lock state and fails fast when lockfile or dependency metadata drift occurs.
…arquet Document why `2020_11_04_CPJUMP1_all_plates.parquet` is included in the package and how it is generated from JUMP Cell Painting Gallery data via the linked JUMP-single-cell notebook. Summarize the transformation workflow and add an update policy so future regenerations remain reproducible and traceable.
Update the project dependency from pandas>=1.5 to pandas>=2.2,<4 to align with current ecosystem standards while allowing 3.x. This tightens compatibility expectations and avoids claiming support for older, untested pandas releases.
Re-export jump_pilot downloader/metadata symbols from jump_image_datasets to make the public API explicit at the package boundary. Add an autouse cache-reset fixture in metadata tests to prevent cross-test cache leakage and ensure deterministic test behavior.
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Thanks @d33bs ! Merging now |
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This pr allows someone to download image data and load image metadata from the JUMP pilot dataset. Other datasets may be included in this repo in the future. Also, it will likely be published to pypi later, so it may implement tagging in the future.