Data Structure Reference

The output folder will contain several data files:

uncorrected_Data.mat % raw image series from tifs, as a .mat file
Alignment.mat % Flight alignment data
AV_data.mat % microscope metadata
CNMFe_200811_0359_raw_.mat % CNMFe stats
Motion_corrected_Data_DS.mat % spatially downsampled motion corrected image series data
Motion_corrected_Data.mat % Motion corrected image series data
results.mat % ROI time series data from CNMFe

%% Aggregation Data format

Data is aggregated across days and has the following format:

aligned_data_struct
cell_registered_struct
CombinedROI
flightPaths
master_track_file
modeled_data_struct
ROI_Data

The following should be performed to check extraction dates:

[Extraction_Metadata] = ImBat_PreCheck(ROI_Data);