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[pre-commit.ci] pre-commit autoupdate #562

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Merged
emersodb merged 8 commits into from
Jun 9, 2026
Merged

[pre-commit.ci] pre-commit autoupdate #562

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bf65de5
Bump astral-sh/setup-uv from 8.1.0 to 8.2.0
dependabot[bot] Jun 3, 2026
061fe87
[pre-commit.ci] pre-commit autoupdate
pre-commit-ci[bot] Jun 8, 2026
0779d16
Bump codecov/codecov-action from 6 to 7
dependabot[bot] Jun 8, 2026
9a27ea1
Upgrading some libraries to address vulnerabilities
emersodb Jun 9, 2026
0dd12bb
Merge branch 'pre-commit-ci-update-config' into dependabot/github_act…
emersodb Jun 9, 2026
edd55bc
Merge pull request #563 from VectorInstitute/dependabot/github_action…
emersodb Jun 9, 2026
e7e3518
Merge branch 'pre-commit-ci-update-config' into dependabot/github_act…
emersodb Jun 9, 2026
7536cab
Merge pull request #566 from VectorInstitute/dependabot/github_action…
emersodb Jun 9, 2026
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2 changes: 1 addition & 1 deletion .github/workflows/docs.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -47,7 +47,7 @@ jobs:
uses: actions/checkout@v6

- name: Install uv
uses: astral-sh/setup-uv@v8.1.0
uses: astral-sh/setup-uv@v8.2.0
with:
version: "0.9.11"
enable-cache: true
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4 changes: 2 additions & 2 deletions .github/workflows/nnunet_smoke_tests.yaml
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Expand Up @@ -23,7 +23,7 @@ jobs:
uses: actions/checkout@v6

- name: Install uv
uses: astral-sh/setup-uv@v8.1.0
uses: astral-sh/setup-uv@v8.2.0
with:
version: "0.9.11"
enable-cache: true
Expand Down Expand Up @@ -53,7 +53,7 @@ jobs:
run: uv run pytest --test-group-count=4 --test-group=${{ matrix.group }} -v --cov fl4health --cov-report=xml tests/smoke_tests/test_nnunet_smoke_tests.py

- name: Upload coverage to Codecov
uses: codecov/codecov-action@v6
uses: codecov/codecov-action@v7
with:
token: ${{ secrets.CODECOV_TOKEN }}
slug: VectorInstitute/FL4Health
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2 changes: 1 addition & 1 deletion .github/workflows/publish_and_release.yml
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Expand Up @@ -19,7 +19,7 @@ jobs:
uses: actions/checkout@v6

- name: Install uv
uses: astral-sh/setup-uv@v8.1.0
uses: astral-sh/setup-uv@v8.2.0
with:
version: "0.9.11"
enable-cache: true
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4 changes: 2 additions & 2 deletions .github/workflows/standard_smoke_tests.yaml
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Expand Up @@ -23,7 +23,7 @@ jobs:
uses: actions/checkout@v6

- name: Install uv
uses: astral-sh/setup-uv@v8.1.0
uses: astral-sh/setup-uv@v8.2.0
with:
version: "0.9.11"
enable-cache: true
Expand Down Expand Up @@ -53,7 +53,7 @@ jobs:
run: uv run pytest --test-group-count=4 --test-group=${{ matrix.group }} -v --cov fl4health --cov-report=xml tests/smoke_tests/test_standard_smoke_tests.py

- name: Upload coverage to Codecov
uses: codecov/codecov-action@v6
uses: codecov/codecov-action@v7
with:
token: ${{ secrets.CODECOV_TOKEN }}
slug: VectorInstitute/FL4Health
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2 changes: 1 addition & 1 deletion .github/workflows/static_code_checks.yaml
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Expand Up @@ -20,7 +20,7 @@ jobs:
uses: actions/checkout@v6

- name: Install uv
uses: astral-sh/setup-uv@v8.1.0
uses: astral-sh/setup-uv@v8.2.0
with:
version: "0.9.11"
enable-cache: true
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4 changes: 2 additions & 2 deletions .github/workflows/tests.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -20,7 +20,7 @@ jobs:
uses: actions/checkout@v6

- name: Install uv
uses: astral-sh/setup-uv@v8.1.0
uses: astral-sh/setup-uv@v8.2.0
with:
version: "0.9.11"
enable-cache: true
Expand Down Expand Up @@ -48,7 +48,7 @@ jobs:
run: uv run pytest -m "not smoketest" -v --cov fl4health --cov-report=xml tests

- name: Upload coverage to Codecov
uses: codecov/codecov-action@v6
uses: codecov/codecov-action@v7
with:
token: ${{ secrets.CODECOV_TOKEN }}
slug: VectorInstitute/FL4Health
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4 changes: 2 additions & 2 deletions .pre-commit-config.yaml
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@@ -1,6 +1,6 @@
repos:
- repo: https://github.com/astral-sh/uv-pre-commit
rev: 0.11.16
rev: 0.11.19
hooks:
- id: uv-lock

Expand All @@ -26,7 +26,7 @@ repos:
- id: check-toml

- repo: https://github.com/astral-sh/ruff-pre-commit
rev: 'v0.15.14'
rev: 'v0.15.16'
hooks:
- id: ruff-check
args: [--fix, --exit-non-zero-on-fix]
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426 changes: 215 additions & 211 deletions uv.lock
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