A Phenotype to Gene Regulatory Network Visualizer.
The code in this repository is a Java web application which allows users to create Gene Regulatory Networks (GRNs) from gene to molecular interaction queries and reversed engineered networks. The application also contains functionality for gene homolgue conversion, gene intersection Venn diagram visualization, and a reporting section for individual step or overall downloading capabilities.
To use the iPlant Functionalities, place your iPlant username and password in the IplantCredentials class found in the edu.usd.pheno2grn.iplant package.
Copyright 2014 University of South Dakota Bioinformatics
Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License.