tDRnamer provides a consistent, stable name with annotations for submitted tDR sequences based on the described naming system. It consists of a standalone version that can be run on a Linux/Unix platform with a large data set including pre-processed small RNA-seq reads (FASTQ file format) and tDR sequences (FASTA file format). Researchers who have a smaller set of tDR sequences or prefer to use a point-and-click environment can utilize the web-based version at http://trna.ucsc.edu/tDRnamer/ that does not require any software installation. Moreover, tDRnamer can take tDR names that are formatted according to our naming system and obtain the corresponding sequences with related annotations.
This repository contains the source code of the web server application. For the source code of the standalone version, please visit the tDRnamer repository.
For details on the tDR naming system and how to use tDRnamer, please check out the user manual.