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@Transipedia

ANR Transipedia

ANR Transipedia

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  1. dekupl dekupl Public

    Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.

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Repositories

Showing 10 of 24 repositories
  • RiboKast Public

    A reference-free translation predictor for ribo-seq data using k-mers

    Transipedia/RiboKast’s past year of commit activity
    Python 0 0 0 0 Updated Feb 2, 2026
  • RiboKastIndex Public

    Makes k-mer indexes from ribo-seq data

    Transipedia/RiboKastIndex’s past year of commit activity
    Python 0 0 0 0 Updated Feb 2, 2026
  • KaMRaT Public
    Transipedia/KaMRaT’s past year of commit activity
    C++ 13 2 1 0 Updated Jan 4, 2026
  • kmerator Public

    Prototype for decomposition of transcript or gene sequences and extraction of their specific k-mers

    Transipedia/kmerator’s past year of commit activity
    Python 1 GPL-3.0 0 1 0 Updated Nov 13, 2025
  • kmerexplor Public

    KmerExploR provides information of a requested RNA-seq dataset Set.

    Transipedia/kmerexplor’s past year of commit activity
    Python 1 GPL-3.0 1 1 0 Updated Oct 14, 2025
  • KamScan Public

    A simple Python script for scanning a kmer count matrix and select lines with desired statistics

    Transipedia/KamScan’s past year of commit activity
    Python 2 1 0 0 Updated Aug 8, 2025
  • Annotate-contigs Public

    Generalized contig annotation (dekupl-annot 2.0 in python)

    Transipedia/Annotate-contigs’s past year of commit activity
    Python 3 0 1 0 Updated Jul 4, 2025
  • mkprobe Public

    Build contigs from contiguous kmers stored as fasta files

    Transipedia/mkprobe’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Jun 2, 2025
  • countTags Public

    Count few Tags fast and in large number of fastq file

    Transipedia/countTags’s past year of commit activity
    C++ 1 1 0 0 Updated Feb 6, 2025
  • Reindeer-use-cases Public
    Transipedia/Reindeer-use-cases’s past year of commit activity
    0 0 0 0 Updated Nov 25, 2024
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