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7b6c7a7
initial branch commit
jspaezp Oct 1, 2024
9c9f6ca
feat: added precursor index to transposed
jspaezp Oct 17, 2024
3263f91
chore: clippy and format
jspaezp Oct 17, 2024
3564fcc
feat(wip)!: addition of simpler index n ...a lot
jspaezp Oct 22, 2024
833bea0
(chore,feat): Added new index and refactored benchmarks
jspaezp Oct 24, 2024
1ad2454
(refactor,feat) added benchmark plotting and cleanup
jspaezp Oct 24, 2024
f549bfa
feat: first benchmark results and refactor trait
jspaezp Oct 26, 2024
75601e9
refactor: changed logging to tracing and testing
jspaezp Oct 28, 2024
2fdbfad
feat(centroiding): 15pct speedup in centroiding
jspaezp Oct 28, 2024
13aeff1
... a lot ....
jspaezp Oct 29, 2024
faf4682
chore(benchmarks): updated benchmarks
jspaezp Oct 30, 2024
37e39a5
refactor!: agg/query traits and cli
jspaezp Oct 30, 2024
c4cde15
refactor(errors)!: refactored errors
jspaezp Oct 31, 2024
7dbf592
chore: version bump
jspaezp Oct 31, 2024
0fd0173
(feat,wip) initial move to ms1 + trait cleanup
jspaezp Oct 31, 2024
68855a6
feat(wip,trait)!: aggregator context propagation
jspaezp Nov 1, 2024
8dd51e6
feat(wip)!: ms1 quant
jspaezp Nov 1, 2024
180ec83
feat: initial plotting snippet
jspaezp Nov 3, 2024
b262e29
feat: updated plot
jspaezp Nov 3, 2024
e1a3116
style: new fmt settings
jspaezp Nov 3, 2024
dd0cb50
chore: added pre-commit
jspaezp Nov 3, 2024
10f0b76
chore: clippy and updated benches
jspaezp Nov 4, 2024
f2b67b7
feat(wip,aggregation)!: Addition of expected int
jspaezp Nov 4, 2024
3257238
(feat,wip) move towards cosine sim with expected intensities
jspaezp Nov 4, 2024
1bb9a23
(feat,wip) cosine sim (fix) bufffer flush
jspaezp Nov 4, 2024
78aae15
(feat) updated metrics and benches
jspaezp Nov 8, 2024
aac2f8f
feat: more propagation of expected intensities
jspaezp Nov 12, 2024
e98b685
feat(scoring)!: WIP on moving apex score calc
jspaezp Nov 13, 2024
abedea2
feat!: cross scoring
jspaezp Nov 14, 2024
51feb9f
feat: propagated mass error info
jspaezp Nov 18, 2024
c10fdd5
Merge pull request #7 from TalusBio/feat/ms1_quant
jspaezp Nov 18, 2024
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1 change: 0 additions & 1 deletion .gitignore
Original file line number Diff line number Diff line change
Expand Up @@ -3,4 +3,3 @@
/tmp
.env
results.json

31 changes: 31 additions & 0 deletions .pre-commit-config.yaml
Original file line number Diff line number Diff line change
@@ -0,0 +1,31 @@
repos:
- repo: https://github.com/pre-commit/pre-commit-hooks
rev: v2.3.0
hooks:
- id: trailing-whitespace
- repo: local
hooks:
- id: fmt
name: fmt
description: Format files with cargo fmt.
entry: cargo +nightly fmt
language: system
types: [rust]
args: ["--"]
- id: cargo-check
name: cargo check
description: Check the package for errors.
entry: cargo check
language: system
types: [rust]
pass_filenames: false
- id: clippy
name: clippy
description: Lint rust sources
entry: cargo clippy
language: system
args: ["--", "-D", "warnings"]
types: [rust]
pass_filenames: false


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