v0.31.0: S3 staging + Peptide types + sequence-derived rescore features#60

Merged

jspaezp merged 32 commits into

mainfrom

feat/s3-staging

May 5, 2026

Commits on Apr 21, 2026

feat(timscentroid): promote Layer-0 I/O primitives for S3 staging
jspaezp
committed
refactor(timscentroid): move TimedStep down one layer
jspaezp
committed
feat(tims_stage): scaffold crate for URI resolution + staging
jspaezp
committed
feat(tims_stage): URI resolution + open_reader + upload_file
jspaezp
committed
feat(tims_stage): staging backend, tar walker, prefix materializer, sweep
jspaezp
committed
feat(cli): S3-aware inputs and outputs for timsseek_cli + speclib_build_cli
jspaezp
committed
test(tims_stage) + docs: MinIO smoke + S3 usage notes
jspaezp
committed
chore(tims_stage): prune dead code flagged in final review
jspaezp
committed
fix(timsquery_pyo3): gate pyo3 extension-module behind a cargo feature
jspaezp
committed
perf(s3): parallel idx load, streaming tar payload fetch, load_bench example
jspaezp
committed
refactor(tims_stage): consolidate shared helpers, fix sample_name_from_uri bug
jspaezp
committed

Commits on Apr 22, 2026

Commits on Apr 23, 2026