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0027f65
feat(state save,axis sync): Added state saving and fixed bug with axi…
jspaezp Dec 16, 2025
000ee0d
fix(viewer,spectrum plot): added visible lines to spectrum plot
jspaezp Dec 16, 2025
27f25b7
Update spectrum_display_panel.rs
wenbostar Dec 17, 2025
b456f2f
feat: added lazy index and added aliases to diann reader
jspaezp Dec 17, 2025
6ab1b39
internal: pass diann sidecar
jspaezp Dec 19, 2025
68069d8
refactor(viewer, logic), feature(viewer, scpectrum): A lot ...
jspaezp Dec 19, 2025
3d109a7
test: added carafe data contract
jspaezp Dec 19, 2025
5ea9a09
feat: re-added ndjson serializer to timsseek and clippy ..
jspaezp Dec 20, 2025
b2ad14c
feat(viewer, table): improved table search and display extras
jspaezp Dec 20, 2025
4baac5b
feat(viewer, table): improved table search and display extras
jspaezp Dec 20, 2025
f3ef300
fix(viewer, table): fixed table scrolling + search logic
jspaezp Dec 20, 2025
e15c5bc
feat(viewer), refactor(apex finder): score plot and made apex finder …
jspaezp Dec 22, 2025
e2586db
feat(viewer): drag zoom and isotopes
jspaezp Dec 22, 2025
0b5faa8
ci: add build on PR ... maybe ...
jspaezp Dec 22, 2025
5cee0b1
ci: add build on PR ... maybe ...
jspaezp Dec 22, 2025
023fb94
chore: version bump
jspaezp Dec 22, 2025
8651ee6
chore: clean compiler wanrs
jspaezp Dec 22, 2025
15e6440
chore: hopefully remove last compiler warning ...
jspaezp Dec 22, 2025
24d7fa7
feat(timscentroid): object storage support
jspaezp Dec 23, 2025
7d1da1c
(wip): lazy data use in viewer (fix): predicate pushdown in lazy query
jspaezp Dec 25, 2025
1285e21
... a lot ...
jspaezp Jan 6, 2026
b528eb7
chore: update tests
jspaezp Jan 7, 2026
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28 changes: 28 additions & 0 deletions .github/workflows/cleanup_pr_tags.yml
Original file line number Diff line number Diff line change
@@ -0,0 +1,28 @@
name: Cleanup PR Tags

on:
pull_request:
types: [closed]

jobs:
delete-tag:
if: contains(github.event.pull_request.labels.*.name, 'build-artifact')
runs-on: ubuntu-latest
permissions:
contents: write # Needed to delete tags
steps:
- name: Delete PR Tag
uses: actions/github-script@v7
with:
script: |
const tagName = `pr-build-${context.issue.number}`;
try {
await github.rest.git.deleteRef({
owner: context.repo.owner,
repo: context.repo.repo,
ref: `tags/${tagName}`,
});
console.log(`Successfully deleted tag: ${tagName}`);
} catch (error) {
console.log(`Tag ${tagName} not found or already deleted.`);
}
184 changes: 57 additions & 127 deletions .github/workflows/release.yml
Original file line number Diff line number Diff line change
Expand Up @@ -3,39 +3,41 @@ name: Release
on:
push:
tags:
- 'v?[0-9]+.*' # Trigger on version tags
- 'v?[0-9]+.*'
pull_request:
# 'synchronize' triggers on every push to the PR
# 'reopened' triggers if you close and open the PR again
types: [labeled, synchronize, reopened]

env:
CARGO_TERM_COLOR: always
# Define the binaries to package
# TODO: use our taskfile to centralize the build
RELEASE_BINARIES: timsseek timsquery_cli # timsseek_rts
RELEASE_BINARIES: timsseek timsquery_cli timsquery_viewer

jobs:
create-release:
runs-on: ubuntu-latest
outputs:
upload_url: ${{ steps.create_release.outputs.upload_url }}
steps:
- name: Create Release
id: create_release
uses: softprops/action-gh-release@v2
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
with:
tag_name: ${{ github.ref }}
release_name: Release ${{ github.ref }}
draft: false
prerelease: false

linux-builds:
needs: create-release
runs-on: ubuntu-latest
build-and-release:
# Run on tags OR if the PR has the 'build-artifact' label
if: >
github.event_name == 'push' ||
(github.event_name == 'pull_request' && contains(github.event.pull_request.labels.*.name, 'build-artifact'))
name: Build (${{ matrix.target }})
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
target:
- x86_64-unknown-linux-gnu
# - aarch64-unknown-linux-gnu
include:
- os: ubuntu-latest
target: x86_64-unknown-linux-gnu
artifact_name: linux-x86_64
- os: macos-latest # M-series
target: aarch64-apple-darwin
artifact_name: macos-arm64
# - os: macos-latest
# target: x86_64-apple-darwin
# artifact_name: macos-x86_64
- os: windows-latest
target: x86_64-pc-windows-msvc
artifact_name: windows-x64

steps:
- uses: actions/checkout@v4

Expand All @@ -45,112 +47,40 @@ jobs:
target: ${{ matrix.target }}
cache: true

- name: Build
- name: Build Binaries
shell: bash
run: |
rustup target add ${{ matrix.target }}
for binary in $RELEASE_BINARIES; do
cargo build --release --bin $binary --target ${{ matrix.target }}
done

- name: Prepare binaries
run: |
mkdir artifacts
for binary in $RELEASE_BINARIES; do
cp "target/${{ matrix.target }}/release/$binary" artifacts/
cargo build --release --bin $binary --target ${{ matrix.target }}
done
cd artifacts
tar czf ../${{ matrix.target }}.tar.gz *

- name: Upload Release Assets
uses: actions/upload-release-asset@v1
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
with:
upload_url: ${{ needs.create-release.outputs.upload_url }}
asset_path: ${{ matrix.target }}.tar.gz
asset_name: ${{ matrix.target }}.tar.gz
asset_content_type: application/gzip

macos-builds:
needs: create-release
runs-on: macos-latest
strategy:
matrix:
target:
- x86_64-apple-darwin
- aarch64-apple-darwin
steps:
- uses: actions/checkout@v4

- name: Install Rust
uses: actions-rust-lang/setup-rust-toolchain@v1
with:
target: ${{ matrix.target }}
cache: true


- name: Build
- name: Package Artifacts
shell: bash
run: |
rustup target add ${{ matrix.target }}
for binary in $RELEASE_BINARIES; do
cargo build --release --bin $binary --target ${{ matrix.target }}
done

- name: Prepare binaries
run: |
mkdir artifacts
mkdir dist
for binary in $RELEASE_BINARIES; do
cp "target/${{ matrix.target }}/release/$binary" artifacts/
[ "${{ matrix.os }}" = "windows-latest" ] && EXT=".exe" || EXT=""
cp "target/${{ matrix.target }}/release/${binary}${EXT}" dist/
done
cd artifacts
tar czf ../${{ matrix.target }}.tar.gz *

- name: Upload Release Assets
uses: actions/upload-release-asset@v1
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}

if [ "${{ matrix.os }}" = "windows-latest" ]; then
7z a "${{ matrix.artifact_name }}.zip" ./dist/*
else
tar -czf "${{ matrix.artifact_name }}.tar.gz" -C dist .
fi

- name: Upload to GitHub Release
uses: softprops/action-gh-release@v2
with:
upload_url: ${{ needs.create-release.outputs.upload_url }}
asset_path: ${{ matrix.target }}.tar.gz
asset_name: ${{ matrix.target }}.tar.gz
asset_content_type: application/gzip

# windows-builds:
# needs: create-release
# runs-on: windows-latest
# steps:
# - uses: actions/checkout@v4

# - name: Install Rust
# uses: actions-rust-lang/setup-rust-toolchain@v1
# with:
# target: x86_64-pc-windows-msvc
# cache: true

# - name: Build
# run: |
# rustup target add x86_64-pc-windows-msvc
# for binary in $RELEASE_BINARIES; do
# cargo build --release --bin $binary --features="build-binary" --target x86_64-pc-windows-msvc
# done

# - name: Prepare binaries
# shell: bash
# run: |
# mkdir artifacts
# for binary in $RELEASE_BINARIES; do
# cp "target/x86_64-pc-windows-msvc/release/$binary.exe" artifacts/
# done
# cd artifacts
# tar czf ../x86_64-pc-windows-msvc.tar.gz *

# - name: Upload Release Assets
# uses: actions/upload-release-asset@v1
# env:
# GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
# with:
# upload_url: ${{ needs.create-release.outputs.upload_url }}
# asset_path: x86_64-pc-windows-msvc.tar.gz
# asset_name: x86_64-pc-windows-msvc.tar.gz
# asset_content_type: application/gzip

# Use the tag name for pushes, or a special 'pr-#' tag for PRs
tag_name: "${{ github.event_name == 'push' && github.ref_name || format('pr-build-{0}', github.event.pull_request.number) }}"
name: "${{ github.event_name == 'push' && github.ref_name || format('Pre-release Build (PR #{0})', github.event.pull_request.number) }}"
# Mark as prerelease if it's a PR
prerelease: ${{ github.event_name == 'pull_request' }}
draft: false
make_latest: ${{ github.event_name == 'push' && 'true' || 'false' }}
files: |
*.tar.gz
*.zip
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
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