v1.2.2

Changes

• Added scons dependency.

Full Changelog: v1.2.1...v1.2.2

v1.2.1

Changes

• [#346] Updated the copyright
• [#347] Enabled timeouts for spatial simulations

Bug Fixes

• [#349] Fixed plotting for ensemble results.

closes #253
closes #348

Full Changelog: v1.2.0...v1.2.1

v1.2.0

Changes

• [#330] Converted make structure with S-Construct structure.

Bug Fixes

• [#338] Fixed type IDs when using file lattices.
• [#342] Fixed notebook plotting using plotly.
• [#343] Fixed numerical errors in the lattice objects.
• [#344] Fixed remove actions.

Full Changelog: v1.1.2...v1.2.0

v1.1.2

Changes

• [#226] Added Github action to auto build documentation.
• [#332] Added test for pylint.

Bug Fixes

• [#329] Fixed stochastic propensities for homo-dimer bimolecular reactions.
• [#333] Fixed issue causing a divide by zero error when radius is evenly divisible by the deltas.
• [#334] Fixed issue with remove actions not removing the particle location.

closes #328

Full Changelog: v1.1.1...v1.1.2

v1.1.1

Bug Fixes

• [#321] Fixed MinGW compatibility issues.
• [#326] Fixed homo-dimer bimolecular propensity functions for mass-action reactions.

Full Changelog: v1.1.0...v1.1.1

v1.1.0

Changes

• [#301] Added a new combinatory geometry class.
• [#303] Added a new lattice module to support spherical and cylindrical coordinate systems.
• [#304, #311, #312] Added a new transformation module to allow users to manipulate domain regions.
• [#305] Implemented domain actions to allow users to create, preview and apply multiple actions at once.
• [#315] Updated documentation.
• [#308] Updated examples.

Bug Fixes

• [#314] Fixed particle diffusion.
• [#300] Fixed default values for Domain.add_point.

Full Changelog: v1.0.4...v1.1.0

v1.0.4

Release v1.0.4

Changes

• [#287] Added simple example of spatial birth death to README and added a README to examples.

Bug Fixes

• [#282] Refactored the defaults for type_id's.
• [#285] Added check to raise a proper error when plotting domain types without particles.
• [#286] Fixed calculation of total volume when creating 2D and 3D domains.

Full Changelog: v1.0.3...v1.0.4

v1.0.3

Changes

• improved error messages.
• [#266] Added a new TimeSpan module.
• [#267] Updates to the Species module.
• [#268] Updates to the Parameter module.
• [#272] Updates to the Model module.
• [#273] Updates to the Reaction module.
• [#274] Updates to examples.

v1.0.2

SpatialPy Release v1.0.2

Changes

• [#246] Added enhanced plotting for plotting type_id
• [#249] Added support for parameter names as a species diffusion coefficient
• [#250] Added support for species names as a initial conditions species

v1.0.1

SpatialPy Release v1.0.1

Fixes

• Minor readme changes/fixes