GeneticAssociationAnalysis

This repository contains the scripts to run the post-GWAS analysis pipeline which includes:

• Meta-analysis
• LDSC: SNP hertibility and Genetic correlation
• M statistics: Quantifying Systematic Heterogeneity in Meta-Analysis
• COJO: Conditional Analysis
• COLOC: Coloclization Analysis

Guidance for how to use this repository

Step - 1: setting the config file HomePath: where the scripts are DataPath: where your datasets are SampleWeight: is used to fileter out SNPs that didn't reach out that number of samples ColocWindow: the window to identify the loci and used for Coloclization

Step - 2: create folders and under your path ./00-SetFolders.sh <configfile>

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Guidance for contributing