Version 1.2.6

Version number updated to match version of the Python package SigProfilerExtractor

v1.1.16

• Resolve input handling issues with bedpe and seg files.
• Sync export_probabilities parameter with new SPA version.
• Remove decomposition plots from SPE. Expand Travis tests.

v1.1.13

• Remove old assignment parameter.
• Fix exception seeds path.
• Fix issue decomposition plots.
• Add allow_stability_drop parameter.
• Add support for CNV and SV.
• Reset reference genome to GRCh37 if a not supported genome is selected.
• Add support for COSMIC exome reference signatures.
• Fix typos, requirements, and remove legacy decomposition code.
• Add SigProfilerAssignment version to Job_Metadata file.
• Update "opportunity_genome" parameter passed to SigProfilerAssignment.
• Integrate SigProfilerAssignment for decomposition and subsequent attribution of de novo signatures.
• Update normalization, selection and default NMF replicates.