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  • 05:29 (UTC +05:30)

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ShravyaRS/README.md

Shravya R S

Structural Bioinformatics | Computational Biology | Machine Learning

M.Sc. Bioinformatics

Email GitHub

About

Bioinformatics researcher interested in structural biology, cryo-EM methods, and applying computation to understand biological systems. I build tools for biomolecular structure validation, analyze large-scale genomic and structural datasets, and develop interpretable machine learning models for biomedical applications.

Skills

Languages        Python, R, C, Bash/Linux, MATLAB
Structural Bio   Cryo-EM, mmCIF/PDB, PyMOL, ChimeraX, AlphaFold
ML / Data        scikit-learn, NumPy, SciPy, pandas, matplotlib
Bioinformatics   BioPython, sequence analysis, NGS, drug discovery
Tools            Git, GitHub Actions, Docker/Singularity, HPC

Open to collaborations in structural bioinformatics, computational biology, and biomedical ML.

Pinned Loading

  1. IHMValidation-Analysis IHMValidation-Analysis Public

    Comprehensive technical analysis and exploration of IHMValidation software

    Python 1

  2. mmCIF_Parser_Project mmCIF_Parser_Project Public

    Educational mmCIF parser for protein structure analysis (TPH1 & PAH enzymes) — built from scratch, no Biopython.

    Python 1

  3. cisplatin-rbm-lung-cancer cisplatin-rbm-lung-cancer Public

    Interpretable rule-based prediction of cisplatin response in lung cancer using R.ROSETTA

    R

  4. qscore-validation qscore-validation Public

    Q-score validation: Python (jamaliki/qscore) vs MapQ/Chimera

    Python

  5. enzyme-mutation-fingerprint enzyme-mutation-fingerprint Public

    This project focuses on analyzing mutation resilience in two enzymes, Lysyl Oxidase (LOX) and Glutamate Decarboxylase (GAD), by using binary fingerprint encoding to represent amino acid properties …

    Python 1

  6. IHMValidation IHMValidation Public

    Forked from salilab/IHMValidation

    Validation software for integrative models deposited to PDB

    Python