Xcout README

About

Authors

• Sergio Díaz del Pino
• Pablo Rodríguez Brazzarola
• Marcos Sepúlveda Romero

Team

Bitlab Group

Description

Interactive visualization based on heatmaps to preview a large amount of chromosome and annotation comparisons.

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Installation

Requirements

Python 3 & Bower (Virtualenv is recommended)

Configuration

Get project from GitHub and Python virtualenv

• git clone https://github.com/Sergiodiaz53/Xcout.git
• sudo apt-get install python3 npm virtualenv
• virtualenv -p python3 Xcout
• npm -g install bower

To activate new virtualenv

• source bin/activate

Database config (PostgreSQL)

• sudo apt-get install postgresql postgresql-contrib
• sudo -u postgres createuser xcoutdjango
• sudo -u postgres createdb xcoutdb
• sudo -u postgres psql
• alter user xcoutdjango with encrypted password 'bitlab2310';
• grant all privileges on database xcoutdb to xcoutdjango;
• Use Ctrl+D or \q to exit the console

Install requirements.txt

• pip install -r requirements.txt

Install bower components

• cd static
• bower install
• cd ..

Setup Django

• python manage.py makemigrations
• python manage.py migrate
• python manage.py createsuperuser

Run Xcout

• python manage.py runserver_plus

Database config for Xcout:

    'NAME': 'xcoutdb',
    'USER': 'xcoutdjango',
    'PASSWORD': 'bitlab2310',
    'HOST': 'localhost',