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Genescopefk uses hard coded peak number and kmer size

bugSomething isn't workingSomething isn't working

Status: Open.

#51 In RBGKew/fspassemblypipeline;

· LiaOb21 opened on Apr 21, 2026

Implement use of merged reads

enhancementNew feature or requestNew feature or request

Status: Open.

#49 In RBGKew/fspassemblypipeline;

· LiaOb21 opened on Apr 16, 2026

Optional selection of kmer strategy

enhancementNew feature or requestNew feature or request

Status: Open.

#48 In RBGKew/fspassemblypipeline;

· LiaOb21 opened on Apr 16, 2026

Optional selection of assemblers

enhancementNew feature or requestNew feature or request

Status: Open.

#47 In RBGKew/fspassemblypipeline;

· LiaOb21 opened on Apr 16, 2026

Implement kmer strategy for genome assembly

enhancementNew feature or requestNew feature or request

Status: Open.

#46 In RBGKew/fspassemblypipeline;

· LiaOb21 opened on Apr 16, 2026

Implement selection of the best assembly

enhancementNew feature or requestNew feature or request

Status: Open.

#45 In RBGKew/fspassemblypipeline;

· LiaOb21 opened on Apr 16, 2026

Add parameters for skipping subworkflows

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#38 In RBGKew/fspassemblypipeline;

· Hazelhuangup opened on Apr 2, 2026

writing README

enhancementNew feature or requestNew feature or request

Status: Open.

#34 In RBGKew/fspassemblypipeline;

· Hazelhuangup opened on Apr 1, 2026

Update spades nf-core module to use merged reads OR create a local module for this use case

enhancementNew feature or requestNew feature or request

Status: Open.

#22 In RBGKew/fspassemblypipeline;

· LiaOb21 opened on Mar 17, 2026

Create nf-core module for masurca

enhancementNew feature or requestNew feature or request

Status: Open.

#17 In RBGKew/fspassemblypipeline;

· LiaOb21 opened on Mar 5, 2026

Create an nf-core module or kmc kmer counting tool

enhancementNew feature or requestNew feature or request

Status: Open.

#4 In RBGKew/fspassemblypipeline;

· Hazelhuangup opened on Feb 19, 2026