ENH: Convert python notebooks to python scripts (with percent tags to define cells)#41

Merged

aylward merged 23 commits intoProject-MONAI:mainfrom

aylward:ipynb_to_py

Apr 7, 2026

Commits on Apr 3, 2026

MNT: Convert experiments/Colormap-VTK_To_USD notebooks to py:percent scripts

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MNT: Convert experiments/Convert_VTK_To_USD notebooks to py:percent scripts

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MNT: Convert experiments/Heart-Create_Statistical_Model notebooks to py:percent scripts

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MNT: Convert experiments/Heart-VTKSeries_To_USD notebooks to py:percent scripts

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MNT: Convert experiments/Heart-GatedCT_To_USD notebooks to py:percent scripts

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MNT: Convert experiments/Heart-Statistical_Model_To_Patient notebooks to py:percent scripts

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MNT: Convert experiments/Lung-GatedCT_To_USD notebooks to py:percent scripts

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MNT: Convert experiments/Reconstruct4DCT notebooks to py:percent scripts

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MNT: Convert experiments/Heart-Simpleware_Segmentation notebooks to py:percent scripts

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MNT: Convert experiments/DisplacementField_To_USD notebooks to py:percent scripts

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MNT: Convert experiments/Lung-VesselsAirways notebooks to py:percent scripts

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MNT: Convert data/DirLab-4DCT notebooks to py:percent scripts

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MNT: Convert data/Slicer-Heart-CT notebooks to py:percent scripts

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MNT: Anchor all experiment script paths to __file__

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DOC: Update docs to reflect py:percent experiment scripts

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FIX: Remove emoji from test output to fix Windows cp1252 encoding
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MNT: Remove emojis from test_experiments.py output and docstrings
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STYLE: Update based on CoPilot and CodeRabbit reviews
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FIX: Fix bugs, dead code, and stale references flagged by Copilot/CodeRabbit
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FIX: Fix spatial misalignment, typos, and stale comments in experiments
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Commits on Apr 5, 2026

Commits on Apr 7, 2026

STYLE: copilot reporting of ruff / unused vars
aylward
committed

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ENH: Convert python notebooks to python scripts (with percent tags to define cells)#41

ENH: Convert python notebooks to python scripts (with percent tags to define cells)#41
aylward merged 23 commits intoProject-MONAI:mainfrom
aylward:ipynb_to_py

Commits on Apr 3, 2026

MNT: Convert experiments/Colormap-VTK_To_USD notebooks to py:percent scripts

MNT: Convert experiments/Convert_VTK_To_USD notebooks to py:percent scripts

MNT: Convert experiments/Heart-Create_Statistical_Model notebooks to py:percent scripts

MNT: Convert experiments/Heart-VTKSeries_To_USD notebooks to py:percent scripts

MNT: Convert experiments/Heart-GatedCT_To_USD notebooks to py:percent scripts

MNT: Convert experiments/Heart-Statistical_Model_To_Patient notebooks to py:percent scripts

MNT: Convert experiments/Lung-GatedCT_To_USD notebooks to py:percent scripts

MNT: Convert experiments/Reconstruct4DCT notebooks to py:percent scripts

MNT: Convert experiments/Heart-Simpleware_Segmentation notebooks to py:percent scripts

MNT: Convert experiments/DisplacementField_To_USD notebooks to py:percent scripts

MNT: Convert experiments/Lung-VesselsAirways notebooks to py:percent scripts

MNT: Convert data/DirLab-4DCT notebooks to py:percent scripts

MNT: Convert data/Slicer-Heart-CT notebooks to py:percent scripts

MNT: Anchor all experiment script paths to file

DOC: Update docs to reflect py:percent experiment scripts

FIX: Remove emoji from test output to fix Windows cp1252 encoding

MNT: Remove emojis from test_experiments.py output and docstrings

STYLE: Update based on CoPilot and CodeRabbit reviews

FIX: Fix bugs, dead code, and stale references flagged by Copilot/CodeRabbit

FIX: Fix spatial misalignment, typos, and stale comments in experiments

Commits on Apr 5, 2026

FIX: Use Rigid (not Affine) ICP and guard against empty mesh list

DOC: Correct ICP registration docs to say Affine (not Rigid)

Commits on Apr 7, 2026

STYLE: copilot reporting of ruff / unused vars