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TWT cannot handle underscores in the names of variables in the YAML file

Status: Open.

#146 In PoonLab/twt;

· hugocastelan opened on Dec 3, 2025

Function to export simulated trees from twt

Status: Open.

#145 In PoonLab/twt;

· hugocastelan opened on Nov 24, 2025

Update Transmission and Simulation documentation (wiki) - Newick string inputs

Status: Open.

#143 In PoonLab/twt;

· WongDWai opened on Aug 14, 2025

Population-dependent rates

Status: Open.

#142 In PoonLab/twt;

· ekankaka opened on Nov 10, 2022

Simulating intracellular pathogen

Status: Open.

#141 In PoonLab/twt;

· ekankaka opened on Nov 10, 2022

outer plot stops before time zero if last event is not at zero

Status: Open.

#136 In PoonLab/twt;

· RouxCil opened on Mar 18, 2022

If user runs sim.outer.tree with only one compartment, twt should warn

Status: Open.

#134 In PoonLab/twt;

· ArtPoon opened on Feb 23, 2022

Refactor CompartmentType, etc

Status: Open.

#133 In PoonLab/twt;

· ArtPoon opened on Feb 14, 2022

Sampling a lineage multiple times

Status: Open.

#131 In PoonLab/twt;

· RouxCil opened on Feb 8, 2022

Installing from local issues?

Status: Open.

#130 In PoonLab/twt;

· ewong347 opened on Sep 8, 2021

invalid 'type' (list) of argument

Status: Open.

#127 In PoonLab/twt;

· ArtPoon opened on Oct 13, 2020

Instead of fixing bottleneck size for CompartmentType, draw from distribution

Status: Open.

#126 In PoonLab/twt;

· ArtPoon opened on Aug 4, 2020