Adding node layers to tests and loaders

raphtory/examples/snb_loader.rs

@@ -332,6 +332,7 @@ fn load_snb_graph(parquet_dir: &Path, graph: &Graph) -> Result<(), GraphError> {
         None,
         None,
         None,
+        None,
         true,
         None,
     )?;

raphtory/resources/test/disk_graphs/event_graph/.raph

@@ -0,0 +1 @@
+{"path":"data0"}

raphtory/resources/test/disk_graphs/event_graph/data0/.meta

@@ -0,0 +1 @@
+{"path":"graph0","meta":{"node_count":0,"edge_count":0,"graph_type":"EventGraph","is_diskgraph":true}}

raphtory/resources/test/disk_graphs/event_graph/data0/graph0/config.json

@@ -0,0 +1,25 @@
+{
+  "base": {
+    "max_node_page_len": 600000,
+    "max_edge_page_len": 6000000
+  },
+  "persistence": {
+    "bg_flush": true,
+    "fsync_on_flush": true,
+    "wal_enabled": true,
+    "group_flush_delay_micros": 10,
+    "min_flush_bytes": 16777216,
+    "node_types": [
+      "Person",
+      "Server"
+    ]
+  },
+  "merge": {
+    "max_memory_bytes": 1073741824,
+    "node_component_count_threshold": 4,
+    "edge_component_count_threshold": 4,
+    "size_ratio_threshold": 10.0,
+    "max_component_size_mb": 500,
+    "prefer_small_merges": true
+  }
+}

raphtory/resources/test/disk_graphs/event_graph/data0/graph0/control.json

@@ -0,0 +1 @@
+{"db_state":"Shutdown","last_checkpoint":1657}

raphtory/resources/test/disk_graphs/event_graph/data0/graph0/gid_resolver/CURRENT

@@ -0,0 +1 @@
+MANIFEST-000005

raphtory/resources/test/disk_graphs/event_graph/data0/graph0/gid_resolver/IDENTITY

@@ -0,0 +1 @@
+fac62e15-114d-4e3d-9202-a00465358aea

raphtory/resources/test/disk_graphs/event_graph/data0/graph0/gid_resolver/OPTIONS-000007

@@ -0,0 +1,216 @@
+# This is a RocksDB option file.
+#
+# For detailed file format spec, please refer to the example file
+# in examples/rocksdb_option_file_example.ini
+#
+
+[Version]
+  rocksdb_version=10.4.2
+  options_file_version=1.1
+
+[DBOptions]
+  max_background_flushes=-1
+  compaction_readahead_size=2097152
+  strict_bytes_per_sync=false
+  wal_bytes_per_sync=0
+  max_open_files=-1
+  stats_history_buffer_size=1048576
+  max_total_wal_size=0
+  stats_persist_period_sec=600
+  stats_dump_period_sec=600
+  avoid_flush_during_shutdown=false
+  max_subcompactions=1
+  bytes_per_sync=0
+  delayed_write_rate=16777216
+  max_background_compactions=-1
+  max_background_jobs=12
+  delete_obsolete_files_period_micros=21600000000
+  writable_file_max_buffer_size=1048576
+  follower_catchup_retry_wait_ms=100
+  file_checksum_gen_factory=nullptr
+  allow_data_in_errors=false
+  max_bgerror_resume_count=2147483647
+  best_efforts_recovery=false
+  wal_write_temperature=kUnknown
+  write_identity_file=true
+  write_dbid_to_manifest=true
+  atomic_flush=false
+  manual_wal_flush=true
+  two_write_queues=false
+  avoid_flush_during_recovery=false
+  dump_malloc_stats=false
+  info_log_level=INFO_LEVEL
+  write_thread_slow_yield_usec=3
+  unordered_write=true
+  follower_refresh_catchup_period_ms=10000
+  log_readahead_size=0
+  enable_pipelined_write=false
+  allow_ingest_behind=false
+  persist_stats_to_disk=false
+  WAL_ttl_seconds=0
+  bgerror_resume_retry_interval=1000000
+  allow_concurrent_memtable_write=true
+  paranoid_checks=true
+  WAL_size_limit_MB=0
+  metadata_write_temperature=kUnknown
+  lowest_used_cache_tier=kNonVolatileBlockTier
+  keep_log_file_num=1000
+  table_cache_numshardbits=6
+  max_file_opening_threads=16
+  background_close_inactive_wals=false
+  wal_recovery_mode=kPointInTimeRecovery
+  follower_catchup_retry_count=10
+  db_write_buffer_size=0
+  allow_2pc=false
+  skip_checking_sst_file_sizes_on_db_open=false
+  skip_stats_update_on_db_open=false
+  recycle_log_file_num=0
+  db_host_id=__hostname__
+  track_and_verify_wals_in_manifest=false
+  use_fsync=false
+  wal_compression=kNoCompression
+  compaction_verify_record_count=true
+  error_if_exists=false
+  manifest_preallocation_size=4194304
+  is_fd_close_on_exec=true
+  enable_write_thread_adaptive_yield=true
+  track_and_verify_wals=false
+  enable_thread_tracking=false
+  avoid_unnecessary_blocking_io=false
+  allow_fallocate=true
+  max_log_file_size=0
+  advise_random_on_open=true
+  create_missing_column_families=false
+  max_write_batch_group_size_bytes=1048576
+  use_adaptive_mutex=false
+  prefix_seek_opt_in_only=false
+  wal_filter=nullptr
+  create_if_missing=true
+  enforce_single_del_contracts=true
+  allow_mmap_writes=true
+  verify_sst_unique_id_in_manifest=true
+  log_file_time_to_roll=0
+  use_direct_io_for_flush_and_compaction=false
+  flush_verify_memtable_count=true
+  max_manifest_file_size=1073741824
+  write_thread_max_yield_usec=100
+  use_direct_reads=false
+  allow_mmap_reads=true
+
+
+[CFOptions "default"]
+  memtable_avg_op_scan_flush_trigger=0
+  memtable_op_scan_flush_trigger=0
+  compression_manager=nullptr
+  bottommost_file_compaction_delay=0
+  memtable_protection_bytes_per_key=0
+  bottommost_compression=kDisableCompressionOption
+  sample_for_compression=0
+  blob_compression_type=kNoCompression
+  paranoid_memory_checks=false
+  blob_garbage_collection_age_cutoff=0.250000
+  preclude_last_level_data_seconds=0
+  compaction_options_universal={reduce_file_locking=false;allow_trivial_move=false;stop_style=kCompactionStopStyleTotalSize;max_read_amp=-1;min_merge_width=2;compression_size_percent=-1;max_size_amplification_percent=200;incremental=false;max_merge_width=4294967295;size_ratio=1;}
+  target_file_size_base=67108864
+  memtable_whole_key_filtering=true
+  blob_file_starting_level=0
+  soft_pending_compaction_bytes_limit=68719476736
+  max_write_buffer_number=8
+  ttl=2592000
+  compaction_options_fifo={trivial_copy_buffer_size=4096;allow_trivial_copy_when_change_temperature=false;age_for_warm=0;file_temperature_age_thresholds=;allow_compaction=false;max_table_files_size=1073741824;}
+  memtable_huge_page_size=0
+  max_sequential_skip_in_iterations=8
+  strict_max_successive_merges=false
+  max_successive_merges=0
+  enable_blob_garbage_collection=false
+  arena_block_size=1048576
+  bottommost_compression_opts={use_zstd_dict_trainer=true;enabled=false;zstd_max_train_bytes=0;parallel_threads=1;max_compressed_bytes_per_kb=896;checksum=false;max_dict_bytes=0;strategy=0;max_dict_buffer_bytes=0;level=32767;window_bits=-14;}
+  target_file_size_multiplier=1
+  max_bytes_for_level_multiplier_additional=1:1:1:1:1:1:1
+  prepopulate_blob_cache=kDisable
+  blob_compaction_readahead_size=0
+  min_blob_size=0
+  level0_stop_writes_trigger=36
+  blob_garbage_collection_force_threshold=1.000000
+  enable_blob_files=false
+  level0_slowdown_writes_trigger=20
+  default_write_temperature=kUnknown
+  compression=kNoCompression
+  level0_file_num_compaction_trigger=4
+  block_protection_bytes_per_key=0
+  prefix_extractor=rocksdb.FixedPrefix.8
+  max_bytes_for_level_multiplier=10.000000
+  write_buffer_size=67108864
+  uncache_aggressiveness=0
+  disable_auto_compactions=false
+  max_compaction_bytes=1677721600
+  inplace_update_num_locks=10000
+  periodic_compaction_seconds=0
+  experimental_mempurge_threshold=0.000000
+  memtable_prefix_bloom_size_ratio=0.100000
+  max_bytes_for_level_base=268435456
+  paranoid_file_checks=false
+  blob_file_size=268435456
+  preserve_internal_time_seconds=0
+  memtable_max_range_deletions=0
+  compression_opts={use_zstd_dict_trainer=true;enabled=false;zstd_max_train_bytes=0;parallel_threads=1;max_compressed_bytes_per_kb=896;checksum=false;max_dict_bytes=0;strategy=0;max_dict_buffer_bytes=0;level=32767;window_bits=-14;}
+  hard_pending_compaction_bytes_limit=274877906944
+  last_level_temperature=kUnknown
+  table_factory=BlockBasedTable
+  report_bg_io_stats=false
+  persist_user_defined_timestamps=true
+  sst_partitioner_factory=nullptr
+  compaction_pri=kMinOverlappingRatio
+  compaction_style=kCompactionStyleLevel
+  memtable_factory=SkipListFactory
+  comparator=leveldb.BytewiseComparator
+  bloom_locality=0
+  compaction_filter_factory=nullptr
+  min_write_buffer_number_to_merge=2
+  max_write_buffer_size_to_maintain=536870912
+  compaction_filter=nullptr
+  optimize_filters_for_hits=false
+  default_temperature=kUnknown
+  force_consistency_checks=true
+  merge_operator=nullptr
+  num_levels=7
+  memtable_insert_with_hint_prefix_extractor=nullptr
+  level_compaction_dynamic_level_bytes=true
+  disallow_memtable_writes=false
+  inplace_update_support=false
+
+[TableOptions/BlockBasedTable "default"]
+  num_file_reads_for_auto_readahead=2
+  metadata_cache_options={unpartitioned_pinning=kFallback;partition_pinning=kFallback;top_level_index_pinning=kFallback;}
+  read_amp_bytes_per_bit=0
+  verify_compression=false
+  format_version=6
+  detect_filter_construct_corruption=false
+  optimize_filters_for_memory=true
+  decouple_partitioned_filters=false
+  partition_filters=false
+  initial_auto_readahead_size=8192
+  max_auto_readahead_size=262144
+  enable_index_compression=true
+  checksum=kXXH3
+  index_block_restart_interval=1
+  pin_top_level_index_and_filter=true
+  block_align=false
+  block_size=4096
+  index_type=kBinarySearch
+  filter_policy=bloomfilter:10:false
+  metadata_block_size=4096
+  no_block_cache=false
+  whole_key_filtering=true
+  index_shortening=kShortenSeparators
+  block_size_deviation=10
+  data_block_index_type=kDataBlockBinaryAndHash
+  use_delta_encoding=true
+  data_block_hash_table_util_ratio=0.750000
+  cache_index_and_filter_blocks=false
+  prepopulate_block_cache=kDisable
+  block_restart_interval=16
+  pin_l0_filter_and_index_blocks_in_cache=false
+  cache_index_and_filter_blocks_with_high_priority=true
+  flush_block_policy_factory=FlushBlockBySizePolicyFactory
+

raphtory/resources/test/disk_graphs/event_graph/data0/graph0/graph_props/layer_0__static_graph/0.json

@@ -0,0 +1 @@
+{"paths":["layer_0__static_graph/735519ab-d718-438a-b1c6-5d52c2c1fdc9"],"lsn":459,"earliest":[1,0],"latest":[10,0],"num_entries":0,"max_page_len":0}

raphtory/resources/test/disk_graphs/persistent_graph/.raph

@@ -0,0 +1 @@
+{"path":"data0"}

raphtory/resources/test/disk_graphs/persistent_graph/data0/.meta

@@ -0,0 +1 @@
+{"path":"graph0","meta":{"node_count":0,"edge_count":0,"graph_type":"PersistentGraph","is_diskgraph":true}}

raphtory/resources/test/disk_graphs/persistent_graph/data0/graph0/config.json

@@ -0,0 +1,25 @@
+{
+  "base": {
+    "max_node_page_len": 600000,
+    "max_edge_page_len": 6000000
+  },
+  "persistence": {
+    "bg_flush": true,
+    "fsync_on_flush": true,
+    "wal_enabled": true,
+    "group_flush_delay_micros": 10,
+    "min_flush_bytes": 16777216,
+    "node_types": [
+      "Person",
+      "Server"
+    ]
+  },
+  "merge": {
+    "max_memory_bytes": 1073741824,
+    "node_component_count_threshold": 4,
+    "edge_component_count_threshold": 4,
+    "size_ratio_threshold": 10.0,
+    "max_component_size_mb": 500,
+    "prefer_small_merges": true
+  }
+}

raphtory/resources/test/disk_graphs/persistent_graph/data0/graph0/control.json

@@ -0,0 +1 @@
+{"db_state":"Shutdown","last_checkpoint":1657}

raphtory/resources/test/disk_graphs/persistent_graph/data0/graph0/gid_resolver/CURRENT

@@ -0,0 +1 @@
+MANIFEST-000005

raphtory/resources/test/disk_graphs/persistent_graph/data0/graph0/gid_resolver/IDENTITY

@@ -0,0 +1 @@
+906e45b9-2d87-48e2-8dc3-ca32169f6f19