cNF Modularization And Call Scripts#3

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jjacobson95 wants to merge 9 commits intomainfrom

feature/cnf-modularization

Commits on Nov 24, 2025

Commits on Dec 1, 2025

Updated documentation for run_modality() in 02_run_normalize_omics.Rmd
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Commits on Dec 3, 2025

cleaned up comments
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Commits on Dec 5, 2025

Added README to clarify run order. Moved all old code to leagcy code directory
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moved 03_analyze_modality_correlations.R out of legacy code
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Commits on Jan 12, 2026