Small updates to plots + subtype AUC interaction#71
Open
CamiloPosso wants to merge 1 commit intoPNNL-CompBio:mainfrom
Open
Small updates to plots + subtype AUC interaction#71CamiloPosso wants to merge 1 commit intoPNNL-CompBio:mainfrom
CamiloPosso wants to merge 1 commit intoPNNL-CompBio:mainfrom
Conversation
Added a few small changes to plots, like removing vitalStatus from the NMF heatmaps. Also included the subtype + AUC interaction script.
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Added a few small changes to plots, like removing vitalStatus from the NMF heatmaps.
Added alternate versions subtype_drivers script, one which uses a different normalization before GSEA, and another which considers only the original 159 NMF samples.
Also included the subtype + AUC interaction script.