1.5.0-rdg - Freaky Fossil

[1.5.0-rdg] - Freaky Fossil

Version 1.5.0 with dataverse enabled

Warning : upgrading to this new version requires manual operations.
Please follow the versioning notes

1.5.0 - Freaky Fossil

[1.5.0] - Freaky Fossil

Warning : upgrading to this new version requires manual operations.
Please follow the versioning notes

Changes and new features

• (!1418) [Experiment]

Added option to create and update Experiments with an alternative name.
When searching for an Experiment by name it will also look at the alternative names.
Added display of Experiment alternative name in Experiment details, and in the Experiments list.

• (!1397) [Experiment] Add funding with logo in experiment
• (!1399) [install] install command now create a RDF4J LMDB repository for more efficient persistent data storing.
• (!1374) Update dependencies and add sonarcube dependencies
• (!1395) [device] search device by type and subtypes does not return all devices anymore
• (!1389) [Moves] Move events now use the same Geospatial ontology as Facilities and Sites.
• (!1386) [datafiles]

You can now link data to a data file upon import by adding a "prov_entity" column to the CSV template.
There is now a graphical interface for managing data files from the menu Data -> Datafiles. You can now insert, delete and export data files. A specific process has been developed for spectral data files (DX and CSV), with the possibility to visualize spectra from raw data files of type DX.

• (!1385) [ScientificObject] Added posibility to perform Scientific Object bulk update import on the global Scientific Object page.
• (!1370) [Annotations] Applying experimentation rights management on joined annotations.
• (!1368) [Documents] Applying experimentation rights management on joined documents
• (!1363) [Germplasm]

germplasm import change, it is now possible to update at the same time as we create germplasms.
Any error in any germplasm of the list will cause cancellation of any update or creation.

• (!1379) [facility]

Added the hasDevice and hasVariable properties to Facilities.
Display of the hasDevice and hasVariable property values in a table on the faility details page.

• (!1377) [annotation] Updated date format of annotations to YYYY-MM-DD HH:mm:ss.
• (!1376) [ScientificObject] Scientific Object import change, it is now possible to update multiple scientific objects in an experiment
• (!1362) [annotation] Updated annotation display, resolved sorting issues and fixed line break behavior in description field.
• (!1339) [datafiles] Datafiles can now be searched by files name -> 568d15d (PRADO SEBASTIEN)
• (!1304) [facility] Facilities can now have several locations in time and are displayed on the global map.

Fixed or optimized

• (!1384) [germplasm] creation and update by list is now faster.
• (!1361) [DataFiles]

Fixed not being able to see further than the 5th page on some lists.
DataFiles list now uses the same pagination strategy as Data page.
Added filters to the DataFiles count web-service, so that the filters match the search web-service.

• (!1355) [Data]

Massive optimizations to Data insertion and Data validation.
A zipped CSV document is now saved in the system after a successful data import, visible only by the user who performed the import.
After a successful data import, a "batch uri" is created to represent the imported data, this can be used to filter data or to to delete the imported data.

• (!1353) [Annotation] Annotation table display updated and Fixed sorting issue
• (!1354) [GlobalUriSearch] Repaired global uri search for events
• (!1348) [SchemaSearch]

Some search web-services will now be a lot faster thanks to a new "search by schema" feature.
Faster search time for the search experiments service.
Faster search time for the search projects service.
Faster search time for the search facilities service.
Faster search time for the search devices service.
Faster search time for the search user groups service.
Faster search time for the search factor levels service.

1.4.10-rdg

[1.4.10]

Fixed or optimized

• (!1387) [Variables] Added description and data type in get variable service

1.4.10

[1.4.10]

Fixed or optimized

• (!1387) [Variables] Added description and data type in get variable service

1.4.9-rdg

1.4.9 with rdg enabled

1.4.9

[1.4.9]

Fixed or optimized

• [Email-service] Fixed e-mail service.

1.4.8-rdg

1.4.8 with rdg enabled

1.4.8

[1.4.8]

Fixed or optimized

• (!1365) [Variables] Fixed a non-admin user not being able to search variables when experiments filter was filled with short uris, and the withAssociatedData boolean set to true.

1.4.7-rdg

[1.4.7]

Fixed or optimized

• Fixed security problem of some users having access to all experiments
• Fixed the return types of getFactorLevel and getFactorLevelDetails web-services

1.4.7

[1.4.7]

Fixed or optimized

• Fixed security problem of some users having access to all experiments
• Fixed the return types of getFactorLevel and getFactorLevelDetails web-services