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chore: add ablang and protenix docs #171

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Merged
markgeejw merged 7 commits into from
May 8, 2026
Merged

chore: add ablang and protenix docs #171

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4e36e86
add ablang and protenix docs
markgeejw May 7, 2026
9f31ceb
add masking residue blurb
markgeejw May 7, 2026
7f598fc
Update Using_Protenix.ipynb
yogeshverma1998 May 7, 2026
94765b2
Merge branch 'develop' into feat/ablang-protenix-docs
GiorgiaBorgmann May 8, 2026
b00735b
chore: remove tuple chain_id
markgeejw May 8, 2026
7032066
fix: missing quote
markgeejw May 8, 2026
4ce5d3c
fix: missing comma
markgeejw May 8, 2026
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5 changes: 5 additions & 0 deletions source/python-api/api-reference/embedding.rst
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Expand Up @@ -17,22 +17,27 @@ Models
.. autoclass:: openprotein.embeddings.PoET2Model
:members:
:inherited-members:
:exclude-members: create, get_model

.. autoclass:: openprotein.embeddings.PoETModel
:members:
:inherited-members:
:exclude-members: create, get_model

.. autoclass:: openprotein.embeddings.AbLang2Model
:members:
:inherited-members:
:exclude-members: create, get_model

.. autoclass:: openprotein.embeddings.OpenProteinModel
:members:
:inherited-members:
:exclude-members: create, get_model

.. autoclass:: openprotein.embeddings.ESMModel
:members:
:inherited-members:
:exclude-members: create, get_model

These embedding models inherit from a base :py:class:`~openprotein.embeddings.EmbeddingModel`, due to their shared functionality in providing the :py:meth:`~openprotein.embeddings.EmbeddingModel.embed` method. These can also be used to fit the :ref:`transform-models`.

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