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Merged
markgeejw merged 14 commits into from
Feb 6, 2026
Merged

Release templates docs and REST API updates #165

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72e07c3
update fold spec
markgeejw Jan 27, 2026
e80f34b
update design spec
markgeejw Jan 27, 2026
17ad0ec
fix output for design results
markgeejw Jan 28, 2026
43fcb0f
fix output format
markgeejw Jan 29, 2026
d165716
update rfdiffusion binder design tutorial to use templates
timt51 Jan 30, 2026
8c77b56
update boltzgen binder design tutorial to use templates
timt51 Jan 30, 2026
3bac907
update minimum python version requirement in prereqs sections
timt51 Jan 30, 2026
24e74d8
update success rate when using template over msa
timt51 Jan 31, 2026
ebf05ca
Update required package version for tutorial
markgeejw Feb 6, 2026
5906d37
Update openprotein-python version in pyproject.toml
markgeejw Feb 6, 2026
1a57545
update lock
markgeejw Feb 6, 2026
5e7c870
add template to docs
markgeejw Feb 6, 2026
d472a69
update python client for docstring
markgeejw Feb 6, 2026
3ee2364
Merge pull request #162 from OpenProteinAI/feat/binder-design-use-tem…
markgeejw Feb 6, 2026
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297 changes: 158 additions & 139 deletions pixi.lock
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18 changes: 9 additions & 9 deletions pyproject.toml
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Original file line number Diff line number Diff line change
Expand Up @@ -24,7 +24,7 @@ dependencies = [
"sphinx-notfound-page>=1.1.0,<1.2.0",
"sphinx-design>=0.6.1,<0.7",
# autodoc
"openprotein-python>=0.10.0,<0.11.0",
"openprotein-python>=0.11.1,<0.12.0",
"ipython>=9.8.0,<10",
]

Expand All @@ -44,6 +44,13 @@ build = "sphinx-build source build"
dev = "sphinx-autobuild source build --port 5001"
devinstall = "pip install -e ../openprotein-python-private"

[tool.pixi.environments]
dev = ["dev"]
dev-nb = ["dev", "nb"]

[tool.pixi.dependencies]
pygments = ">=2.19.2,<3"

[dependency-groups]
dev = [
"sphinx-autobuild",
Expand All @@ -57,14 +64,7 @@ dev = [
nb = [
"molviewspec",
"ipykernel",
# "openprotein-python @ git+https://github.com/OpenProteinAI/openprotein-python-private.git@6e6214088bee247f20f72afe0bec4e8f686f08d9",
# "openprotein-python @ git+https://github.com/OpenProteinAI/openprotein-python-private.git@f2bd23a05b917c7e6edccd86a624f2f6cbb9f2a1",
"seaborn",
"scipy",
]

[tool.pixi.environments]
dev = ["dev"]
dev-nb = ["dev", "nb"]

[tool.pixi.dependencies]
pygments = ">=2.19.2,<3"
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