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Release BoltzGen walkthrough #161

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Merged
markgeejw merged 19 commits into from
Jan 21, 2026
Merged

Release BoltzGen walkthrough #161

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11823a8
initial commit of wip notebook adapted from Tim Truong
tbepler Jan 19, 2026
f455a61
remove redundant validation header sections
tbepler Jan 19, 2026
f7c1692
add next steps and links to the end of the walkthrough. revise to use…
tbepler Jan 20, 2026
0b9cb0f
update boltzgen walkthrough to use pdl1 target and proteinmpnn for CD…
tbepler Jan 21, 2026
e209bde
production run of the boltzgen walkthrough with warnings surpressed
tbepler Jan 21, 2026
1164438
remove extra rfd binder design entry from walkthroughs toc
timt51 Jan 18, 2026
44d678b
add nanobody binder design with boltzgen to walkthrough index
timt51 Jan 18, 2026
b43d9f1
first pass on revisions
timt51 Jan 21, 2026
f3000d0
second pass on revisions; mention using Complex for inverse folding m…
timt51 Jan 21, 2026
9d5b3b8
update nanbody design link in rfdiffusion tutorial
timt51 Jan 21, 2026
8cfcc08
fix tool list to use proteinmpnn instead of poet-2
timt51 Jan 21, 2026
ed60314
third pass on revising; adjust filtering thresholds to more standard …
timt51 Jan 21, 2026
c8b047b
change poet_result to proteinmpnn_result
timt51 Jan 21, 2026
0abae7e
use relative links
markgeejw Jan 21, 2026
87105e2
use relative links for boltzgen tutorial too
timt51 Jan 21, 2026
9a71209
one more relative link
timt51 Jan 21, 2026
c136bfb
update to py314
timt51 Jan 21, 2026
40ffcd7
update code for extracting binder sequences since we're rerunning on …
timt51 Jan 21, 2026
97665f2
Merge pull request #159 from OpenProteinAI/feat/binder-design-nanobod…
markgeejw Jan 21, 2026
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