Moving AFE Protocols around a bit #1775
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Similar to #1769
The idea here is just to move a few things around to make it easier to do multi-unit and then restarts, it is not the defenitive module structure.
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newsentry, or the changes are not user-facing.pre-commit.ci autofixbefore requesting review.Manual Tests: these are slow so don't need to be run every commit, only before merging and when relevant changes are made (generally at reviewer-discretion).
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