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add air gapped data upload docs #1156

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starting to add air gapped data upload docs
atravitz Feb 21, 2025
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updating section title
atravitz Feb 25, 2025
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Merge branch 'main' into docs_add_airgapped_test_instructions
atravitz Feb 25, 2025
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10 changes: 10 additions & 0 deletions docs/installation.rst
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Expand Up @@ -644,6 +644,16 @@ The output of the script will also be printed to standard out as it is executed.
While no sensitive information is extracted, it is good practice to review the output before sending it or posting it to ensure that nothing needs to be redacted.
For example, if your python path was ``/data/SECRET_COMPOUND_NAME/python`` then that would show up in ``debug.log``.

Testing on Systems Without Internet Access
------------------------------------------

If you run OpenFE's test suite on an HPC that restricts public internet access, OpenFE's tests that require data that are stored on `Zenodo <https://zenodo.org/>`_ will be skipped.

As a workaround, can manually download the data from zenodo, then upload it to the HPC for OpenFE to use:

.. parsed-literal::
$
$ python -c "import pooch; print(pooch.os_cache('openfe'))"

Common Errors
-------------
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