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treatment-patterns-main.R
Purpose: UI and server for selecting which treatment-pattern analyses to view.
Exports: treatmentPatternsViewer, treatmentPatternsServer
treatment-patterns-overview.R
Purpose: Shows sunburst plots across selected analyses and databases.
Exports: treatmentPatternsOverviewViewer, treatmentPatternsOverviewServer
treatment-patterns-table.R
Purpose: Tabular data for treatment-pattern results across analyses and databases.
Exports: treatmentPatternsTabularViewer, treatmentPatternsTabularServer
Provides four tables:
Pathways table: displays the pathways for each analyses and databases
Event Count Table: shows the frequency of pathways that have each event
Event Rank: shows the frequency of each event at each rank
Duration Table: shows the event duration per rank
treatment-patterns-sankey.R
Purpose: Shows Sankey diagrams across selected analyses and databases
Exports: treatmentPatternsSankeyViewer, treatmentPatternsSankeyServer
components-sankey.R
Purpose: Sankey helper functions to build grouped Sankey plots. Provides a helper that splits input data by filterColumn to produce multiple Sankeys.
Key parameters:
sankeyList: provides values in the filterColumn to create separate grouped sankey plots
filterColumn: string name of a column in the input data to split by (e.g., "databaseName"). The helper will compute sankey inputs for each value defined in sankeyList
components-sunburstPlot.R
Purpose: Sunburst helper functions to build grouped Sunburst plots. Provides a helper that splits input data by filterColumn to produce multiple Sankeys.
Key parameters:
sunburstList: provides values in the filterColumn to create separate grouped sunburstPlot plots
filterColumn: string name of a column in the input data to split by (e.g., "databaseName"). The helper will compute sankey inputs for each value defined in sankeyList
Ex:
filterColumn = 'databaseName'
sunburstList = list(database1, database2)
this will make 2 sunburst plots filtered in the 2 databases