Introduction-To-Bioinformatics

• Nikan Vasei - 400105303
• Erfan Mohammadi - 400170352
• Sero Hartounian - 400170354

Setup and requirements

Find the imposter

• All of the required libraries are included in the notebook

Comparative Analysis of Mitochondrial Genomes

• All of the required libraries are included in the notebook
• MAFFT - required for the MSA(Multi-Sequence Alignment) task
• MEGA - required for constructing the phylogenetic tree using the NJ(Neighbor-Joining) Algorithm
• RAxML-NG (Binary file included in the Applications directory) - required for constructing the phylogenetic tree using the ML(Maximum-Likelihood) Algorithm
• MrBayes - required for constructing the phylogenetic tree using the BI(Bayesian Inference) Algorithm
• FigTree (Jar file included in the Applications directory) - required for visualizing the phylogenetic trees
  • You need Java (version 6 or later) in order to run the jar file for MrBayes

Neural and Immunological Responses of Zebra Finches

• All of the required libraries are included in the notebook