v0.0.53

What's Changed

• added airlift tutorial case by @mjrahimi in #89
• kLa calculation with uncertainty by @malihass in #90
• Update post process doc by @malihass in #91
• Tutorial for bubble column reactor by @malihass in #97
• Describe turbulence model in the tutorials by @malihass in #101
• Fix loop reactor mixing tut by @malihass in #99
• Fixing ci test by @malihass in #105
• Simulated Annealing wrapper with surrogate model selection and hyperparameter tuning by @jainprana in #107
• Segregate figure saving for optimization by @malihass in #109
• Fix and handle tabs in yaml files by @malihass in #110
• update the ci to test python 3.13 by @malihass in #111
• IO of open foam files in python by @malihass in #112
• Centralize postprocess by @malihass in #113
• Add flat panel reactor tutorial and add it to the ci by @malihass in #114
• Document the python reading of open foam files by @malihass in #115
• Generate multiple loop reactor designs by @malihass in #104
• Use logger instead of print by @malihass in #118
• Make sure that presteps.sh and run.sh fail quickly if any command fails by @malihass in #117
• Format sim folder name by @malihass in #120
• Python interface tutorial + reorganize docs by @malihass in #121
• Clean up parsing and exiting by @malihass in #123
• Automatic species thermo write up by @malihass in #124
• Add logs to describe how mesh size is obtained by @malihass in #125
• Addcov by @malihass in #127
• Mean statistics calculation with uncertainty by @malihass in #126
• Safet0 by @malihass in #128
• Generate files in temporary directories for unit tests by @malihass in #129
• Add api doc to RTD by @malihass in #130
• better control automatic gen of docs by @malihass in #131
• explicit path codecov by @malihass in #132
• Flex mesh by @malihass in #134
• post quantity fix by @malihass in #133
• Improved Superficial velocity calculation with paraview by @malihass in #135
• Kla spargerdesign by @malihass in #136
• Fix kla calc by @malihass in #137
• Robustify post process by @malihass in #138
• Fix compute fitted kla by @malihass in #139
• Fall cleanup by @malihass in #140
• Add a field derived from primary ones in the conditioning by @malihass in #142
• Putida global vars fix by @malihass in #144
• Switch NREL to NLR by @malihass in #145
• Update domain name to NatLabRockies by @malihass in #146
• Move to pyproject by @malihass in #147
• fix coverage calculation by @malihass in #148

New Contributors

• @mjrahimi made their first contribution in #89
• @jainprana made their first contribution in #107

Full Changelog: v0.0.16...v0.0.53

v0.0.16

What's Changed

• Minor cleanup by @malihass in #72
• Update the documentation with the new solver and tutorials by @malihass in #73
• Add QuickStart doc by @malihass in #74
• Add sphinx documentation instead of readmes by @malihass in #75
• Upgrade cal tut by @malihass in #77
• Test the pypi package by @malihass in #79
• Typos doc by @malihass in #78
• Fix GitHub page deployment by @malihass in #80
• Calibration tutorial by @malihass in #76
• Add BSD calibration tutorial and result to docs by @malihass in #84
• Fix images titles and arrangements in docs by @malihass in #85
• Add label to calibration images for normal-beta tutorial and rename calibration doc page by @malihass in #86
• Readable and labelled figures for the doc+ inverse model case upload by @malihass in #87
• Fix doc compilation error by @malihass in #88

Full Changelog: v0.0.15...v0.0.16

v0.0.15

What's Changed

• add projectedBased column by @malihass in #2
• Optim setup by @malihass in #3
• Conditional mean plot by @malihass in #4
• prepare sparger optim by @malihass in #5
• Multi solve by @malihass in #6
• Post by @malihass in #16
• add ofsolvers by @malihass in #17
• Python version by @malihass in #19
• Rename to bird by @malihass in #20
• Spelling checks by @malihass in #21
• Reorganize the repo by @malihass in #22
• Add documentation for inverse modeling by @malihass in #23
• add pypi description by @malihass in #24
• fix image links by @malihass in #25
• block rectangular building block by @malihass in #26
• Surf patch bc by @malihass in #27
• Case fix + prep roc test by @malihass in #30
• Morecases by @malihass in #31
• Morecases by @malihass in #33
• revert numpy-stl to fix action by @malihass in #34
• Dynmix by @malihass in #37
• Various fixes by @malihass in #38
• Fix fvModel template by @malihass in #39
• sign in mixers by @malihass in #40
• Change smear distance based on the number of mesh points by @malihass in #44
• Cubicmix by @malihass in #43
• Headbranch by @malihass in #45
• Reacting loop by @malihass in #48
• pypi release with loop reactor mesh fix by @malihass in #49
• Update reference title by @malihass in #50
• add post path instead of hard coding by @malihass in #51
• Genetic algo sim creation tools by @malihass in #52
• Optim setup by @malihass in #53
• add spatial scaleup script by @malihass in #55
• Calibration tutorial by @malihass in #56
• Calibration of likelihood uncertainty by @malihass in #60
• Fmuni by @fmuni in #64
• Fixed bug in disengagement and removed unused tutorials by @fmuni in #68
• Support python 3.9 + tutorial and experimental tested in CI by @malihass in #66

New Contributors

• @fmuni made their first contribution in #64

Full Changelog: https://github.com/NREL/BioReactorDesign/commits/v0.0.15