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Fix rotamer branch splitting bug#7

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AdriaBarbecho wants to merge 4 commits intodevelfrom
fix_rotamer_branch_splitting_bug
Draft

Fix rotamer branch splitting bug#7
AdriaBarbecho wants to merge 4 commits intodevelfrom
fix_rotamer_branch_splitting_bug

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@AdriaBarbecho
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martimunicoy and others added 4 commits August 8, 2024 17:30
…es when different bifuractions from branches appear. Now, the procedure is:

1. It detects the core.

2. Detects the different branches generated in the core.

3. Search for the different bifurcations inside each of the branches that come out the core, generated in rigid rings.

4. Create the rotamer groups, ordering them by their size. If a bifurcation in a branch is found, one group corresponds to the largest subbranch from the core, and the rotatable bonds left are distributed in different groups considering the ring where the bifurcation appears as the new core.
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