refactor: implement canonical env contract for staging/production switching#201

Merged

VibhavSetlur merged 16 commits into

ModelSEED:stagingfrom

VibhavSetlur:staging

May 11, 2026

Commits on May 11, 2026

refactor: implement canonical env contract with deployment mode

VibhavSetlur
and
Copilot
committed
feat: wire canonical env vars to Docker and deploy scripts

VibhavSetlur
and
Copilot
committed
refactor: update pages to use new config system

VibhavSetlur
and
Copilot
committed
feat: add reaction comments API route

VibhavSetlur
and
Copilot
committed
test: add comprehensive config and biochem tests

VibhavSetlur
and
Copilot
committed
docs: update scripts and documentation for new env system

VibhavSetlur
and
Copilot
committed
docs: update planning documents for env refactor completion

VibhavSetlur
and
Copilot
committed
merge: merge env refactor from develop to staging

VibhavSetlur
and
Copilot
committed
fix(build): default deployment mode and harden deploy workflow

VibhavSetlur
and
Copilot
committed
merge: resolve upstream staging conflicts for deploy and compose

VibhavSetlur
and
Copilot
committed
chore(security): upgrade next.js to patched 16.2.6 release

VibhavSetlur
and
Copilot
committed
fix: resolve Copilot review issues
VibhavSetlur
committed
docs: add RDKit env var note, verify all env vars documented
VibhavSetlur
committed
chore: simplify env - remove RDKit var, keep only PATRIC_TOKEN
VibhavSetlur
committed
fix: unset deployment mode now requires explicit overrides (manual mode)
VibhavSetlur
committed
fix: revert deployment mode default to staging for build convenience
VibhavSetlur
committed