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32 changes: 0 additions & 32 deletions README.html

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This is the source code for the model used in the following paper:

Maran SK, Sieling FH, Demla K, Prinz AA, Canavier CC. "Responses of a
bursting pacemaker to excitation reveal spatial segregation between
bursting and spiking mechanisms". *J Comput Neurosci*. 2011 Mar 1.
[Epub ahead of print]
PubMed PMID: 21360137; PubMed Central PMCID: PMC3160527.

There are three files - ABPDdriver.c, ABPDcon.h and ABPD.h.
- **ABPDcon.h** has the values for different parameters such as
conductance strength, reversal potentials etc
- **ABPD.h** has the code for kinetic equations and current
equations of different channels. Also the code for numerical
method.
- **ABPDdriver.c** has the main function.

To run simulation compile the ABPDdriver file - for example

```
gcc -lm ABPDdriver.c
```

to get executable file and run the executable file with `./a.out`.
The simulation will create the file `tm_volts.xls` that contains the
time in first column and somatic voltage values in the second
column. The units are x-axis in milliseconds and y-axis in millivolts.
The output is the somatic voltage trace of the model during
spontaneous bursting:

![screenshot](./screenshot.jpg)

If you have any questions/comments please contact selvamaran@gmail.com.

---

2025-06-20: Converted README to Markdown.