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Introduce nbval testing #229

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Introduce nbval testing #229

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52be0ec
build(deps): introduce nbval into development dependencies and notebo…
May 11, 2021
1a1f249
build(deps): recompile dependencies
May 11, 2021
3530acc
build(deps): introduce nbval's usage into tox
May 11, 2021
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2 changes: 2 additions & 0 deletions dev-requirements.in
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Original file line number Diff line number Diff line change
@@ -1,6 +1,7 @@
-c requirements.txt

pytest
nbval
pytest-cov
pytest-timeout
requests
Expand All @@ -12,3 +13,4 @@ sphinx_rtd_theme
ipython
tox
python-semantic-release
notebook
88 changes: 68 additions & 20 deletions dev-requirements.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -8,13 +8,15 @@ alabaster==0.7.12
# via sphinx
appdirs==1.4.4
# via virtualenv
argon2-cffi==20.1.0
# via notebook
async-generator==1.10
# via nbclient
attrs==20.3.0
attrs==21.2.0
# via
# jsonschema
# pytest
babel==2.9.0
babel==2.9.1
# via sphinx
backcall==0.2.0
# via ipython
Expand All @@ -27,7 +29,9 @@ certifi==2020.12.5
# -c requirements.txt
# requests
cffi==1.14.5
# via cryptography
# via
# argon2-cffi
# cryptography
chardet==4.0.0
# via
# -c requirements.txt
Expand All @@ -44,7 +48,9 @@ colorama==0.4.4
commonmark==0.9.1
# via recommonmark
coverage==5.5
# via pytest-cov
# via
# nbval
# pytest-cov
cryptography==3.4.7
# via secretstorage
decorator==4.4.2
Expand Down Expand Up @@ -80,20 +86,27 @@ idna==2.10
# requests
imagesize==1.2.0
# via sphinx
importlib-metadata==3.10.1
importlib-metadata==4.0.1
# via
# keyring
# twine
iniconfig==1.1.1
# via pytest
invoke==1.5.0
# via python-semantic-release
ipykernel==5.5.4
# via
# nbval
# notebook
ipython-genutils==0.2.0
# via
# nbformat
# notebook
# traitlets
ipython==7.22.0
# via -r dev-requirements.in
ipython==7.23.1
# via
# -r dev-requirements.in
# ipykernel
jedi==0.18.0
# via ipython
jeepney==0.6.0
Expand All @@ -105,16 +118,22 @@ jinja2==2.11.3
# -c requirements.txt
# nbconvert
# nbsphinx
# notebook
# sphinx
jsonschema==3.2.0
# via nbformat
jupyter-client==6.1.12
# via nbclient
# via
# ipykernel
# nbclient
# nbval
# notebook
jupyter-core==4.7.1
# via
# jupyter-client
# nbconvert
# nbformat
# notebook
jupyterlab-pygments==0.1.2
# via nbconvert
keyring==23.0.1
Expand All @@ -123,21 +142,32 @@ markupsafe==1.1.1
# via
# -c requirements.txt
# jinja2
# sphinx
matplotlib-inline==0.1.2
# via ipython
mistune==0.8.4
# via nbconvert
nbclient==0.5.3
# via nbconvert
nbconvert==6.0.7
# via nbsphinx
# via
# nbsphinx
# notebook
nbformat==5.1.3
# via
# nbclient
# nbconvert
# nbsphinx
nbsphinx==0.8.3
# nbval
# notebook
nbsphinx==0.8.4
# via -r dev-requirements.in
nbval==0.9.6
# via -r dev-requirements.in
nest-asyncio==1.5.1
# via nbclient
notebook==6.3.0
# via -r dev-requirements.in
packaging==20.9
# via
# bleach
Expand All @@ -158,19 +188,23 @@ pluggy==0.13.1
# via
# pytest
# tox
prometheus-client==0.10.1
# via notebook
prompt-toolkit==3.0.18
# via ipython
psutil==5.8.0
# via -r dev-requirements.in
ptyprocess==0.7.0
# via pexpect
# via
# pexpect
# terminado
py==1.10.0
# via
# pytest
# tox
pycparser==2.20
# via cffi
pygments==2.8.1
pygments==2.9.0
# via
# ipython
# jupyterlab-pygments
Expand All @@ -187,18 +221,19 @@ pytest-cov==2.11.1
# via -r dev-requirements.in
pytest-timeout==1.4.2
# via -r dev-requirements.in
pytest==6.2.3
pytest==6.2.4
# via
# -r dev-requirements.in
# nbval
# pytest-cov
# pytest-timeout
python-dateutil==2.8.1
# via
# -c requirements.txt
# jupyter-client
python-gitlab==2.6.0
python-gitlab==2.7.1
# via python-semantic-release
python-semantic-release==7.15.3
python-semantic-release==7.15.4
# via -r dev-requirements.in
pytz==2021.1
# via
Expand All @@ -208,6 +243,7 @@ pyzmq==22.0.3
# via
# -c requirements.txt
# jupyter-client
# notebook
readme-renderer==29.0
# via twine
recommonmark==0.7.1
Expand All @@ -225,19 +261,23 @@ requests==2.25.1
# requests-toolbelt
# sphinx
# twine
rfc3986==1.4.0
rfc3986==1.5.0
# via twine
secretstorage==3.3.1
# via keyring
semver==2.13.0
# via python-semantic-release
send2trash==1.5.0
# via notebook
setuptools-scm==6.0.1
# via dotty-dict
six==1.15.0
six==1.16.0
# via
# -c requirements.txt
# argon2-cffi
# bleach
# jsonschema
# nbval
# python-dateutil
# readme-renderer
# tox
Expand All @@ -248,7 +288,7 @@ snowballstemmer==2.1.0
# via sphinx
sphinx-rtd-theme==0.5.2
# via -r dev-requirements.in
sphinx==3.5.4
sphinx==4.0.1
# via
# -r dev-requirements.in
# nbsphinx
Expand All @@ -266,6 +306,8 @@ sphinxcontrib-qthelp==1.0.3
# via sphinx
sphinxcontrib-serializinghtml==1.1.4
# via sphinx
terminado==0.9.5
# via notebook
testpath==0.4.4
# via nbconvert
toml==0.10.2
Expand All @@ -277,29 +319,35 @@ tomlkit==0.7.0
tornado==6.1
# via
# -c requirements.txt
# ipykernel
# jupyter-client
tox==3.23.0
# notebook
# terminado
tox==3.23.1
# via -r dev-requirements.in
tqdm==4.60.0
# via
# -c requirements.txt
# twine
traitlets==5.0.5
# via
# ipykernel
# ipython
# jupyter-client
# jupyter-core
# matplotlib-inline
# nbclient
# nbconvert
# nbformat
# nbsphinx
# notebook
twine==3.4.1
# via python-semantic-release
urllib3==1.26.4
# via
# -c requirements.txt
# requests
virtualenv==20.4.3
virtualenv==20.4.6
# via tox
wcwidth==0.2.5
# via prompt-toolkit
Expand Down
7 changes: 7 additions & 0 deletions nbval_sanitization
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Original file line number Diff line number Diff line change
@@ -0,0 +1,7 @@
[regex1]
regex: \[\d{4}-\d{2}-\d{2}\ \d{2}:\d{2}:\d{2}.\d{6}\]
replace: TIME_STAMP

[regex2]
regex: (?<=SET STATE: Running\n)(.*\n)*
replace: RUNNING
14 changes: 7 additions & 7 deletions requirements.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,7 @@
#
# pip-compile
#
arrow==1.0.3
arrow==1.1.0
# via jinja2-time
binaryornot==0.4.4
# via cookiecutter
Expand Down Expand Up @@ -89,7 +89,7 @@ networkx==2.5.1
# via
# agentMET4FOF (setup.py)
# mesa
numpy==1.20.2
numpy==1.20.3
# via
# agentMET4FOF (setup.py)
# matplotlib
Expand Down Expand Up @@ -118,7 +118,7 @@ python-dateutil==2.8.1
# arrow
# matplotlib
# pandas
python-slugify==4.0.1
python-slugify==5.0.2
# via cookiecutter
pytz==2021.1
# via pandas
Expand All @@ -128,11 +128,11 @@ requests==2.25.1
# via cookiecutter
retrying==1.3.3
# via plotly
scipy==1.6.2
scipy==1.6.3
# via agentMET4FOF (setup.py)
serpent==1.30.2
serpent==1.40
# via pyro4
six==1.15.0
six==1.16.0
# via
# cookiecutter
# cycler
Expand All @@ -143,7 +143,7 @@ text-unidecode==1.3
# via python-slugify
time-series-buffer==0.1.4b0
# via agentMET4FOF (setup.py)
time-series-metadata==0.1.0
time-series-metadata==0.1.1
# via agentMET4FOF (setup.py)
tornado==6.1
# via mesa
Expand Down
3 changes: 2 additions & 1 deletion tox.ini
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Original file line number Diff line number Diff line change
Expand Up @@ -11,4 +11,5 @@ deps =
-rrequirements.txt
-rdev-requirements.txt
# Run those tests in our virtual environments.
commands = pytest -v --cov=. --junitxml=test-reports/junit.xml .
commands = pytest --nbval --current-env --sanitize-with nbval_sanitization -v --cov=. \
--junitxml=test-reports/junit.xml .