ruvms: Removing unwanted variation in mass spectrometry data

Installation

To install the package, use the following script:

#install.packages("devtools")
devtools::install_github("Mengbo-Li/ruvms")

Data

Sydney Heart Bank (SHB) proteomics data:

Li, M., Parker, B. L., Pearson, E., Hunter, B., Cao, J., Koay, Y. C., ... & O’Sullivan, J. F. (2020). Core functional nodes and sex-specific pathways in human ischaemic and dilated cardiomyopathy. Nature communications, 11(1), 1-12. DOI: https://doi.org/10.1038/s41467-020-16584-z.

Usage

See vignettes for the standard data normalisation procedure using ruvms.

Report an issue

Please open an issue or email me at li.me@wehi.edu.au should you have any questions.