Minor updates to Python API following cmake #3232
Draft
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Posting draft PR to get minor tweaks out of my working directory to prioritise other things.
Found when trying to update a couple of external projects (bids-apps/MRtrix3_connectome#137, porting https://gist.github.com/Lestropie/aee5d9f13ba60dc34593df5e4ccf1125 from a Gist to an external project to replace #2400) that there were some annoying stumbling blocks in trying to use the API outside of the current set of commands. Will use this branch to collect any changes that expedite those external projects.