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Fix CI#378

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IAlibay merged 20 commits into
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fix-ci
May 31, 2026
Merged

Fix CI#378
IAlibay merged 20 commits into
mainfrom
fix-ci

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@IAlibay IAlibay commented May 31, 2026

Summary of the issue:

There is a bug in the 2.6.0 release of mamba which causes odd behaviour with uppercase install calls. CI has been updated to lowercase all install arguments for now.

Main changes done:

  • Fixed uppercase issue with mamba
  • Update stack versions for various CI elements

python-version: "3.13"

- id: get-compatible-python
uses: MDAnalysis/mdanalysis-compatible-python@main
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CI for this is broken -- fixing now

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Comment thread mdakits/propkatraj/metadata.yaml Outdated
documentation_type: UserGuide + API

## Optional entries
## Some optional entries
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This is how you go about testing @orbeckst - you slightly modify a metadata entry, the idea of the design is so that you can isolate & debug without creating noise for a ton of folks

Comment thread .github/workflows/gh-ci.yaml Outdated

- id: debug-mdanalysistests
run: |
mamba install -vv -c conda-forge mdanalysistests
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interestingly, this works fine

@IAlibay
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IAlibay commented May 31, 2026

Ok looking at our mamba install, it looks like we're hitting: mamba-org/mamba#4251

It's been fixed in the latest release of mamba, but 2.6.0 is the latest version being picked by setup-miniconda

@IAlibay IAlibay changed the title [WIP] Working on fixing CI Fix CI May 31, 2026
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IAlibay commented May 31, 2026

Not sure what's happening with propkatraj, but everything else seems to be working again, so let's go with that.

@IAlibay IAlibay merged commit 062a7fe into main May 31, 2026
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@IAlibay IAlibay deleted the fix-ci branch May 31, 2026 23:42
@IAlibay IAlibay mentioned this pull request May 31, 2026
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