updates to all images but r still has maap-py bug

base_images/2i2c/isce3/environment.yml

@@ -52,14 +52,14 @@ dependencies:
   - unidecode=1.4.0
   - unzip=6.0
   - xarray=2026.4.0
-  - pip=26.0.1
+  - pip=26.1.1
   - pip:
-    - jupyter-resource-usage==1.2.0
+    - jupyter-resource-usage==1.2.1
     - jupyter-sshd-proxy==0.3.0
     - jupyterlab-bxplorer==0.2.30
     # - git+https://github.com/MAAP-Project/stac_ipyleaflet.git@0.3.6
-    - morecantile==6.1.0
-    - rio-tiler==7.2.2
+    - morecantile==7.0.3
+    - rio-tiler==9.0.6
     - maap-py==4.2.0
     - maap-algorithms-jupyter-extension==0.5.1
     - maap-jupyter-server-extension==3.0.0

base_images/2i2c/pangeo/docker/Dockerfile

@@ -18,8 +18,6 @@ RUN conda env update -n ${CONDA_ENV} -f "/tmp/environment.yml" \
 
 RUN conda init
 
-RUN jupyter server extension enable maap_jupyter_server_extension
-
 USER root
 COPY scripts/init-user.sh /usr/local/bin/init-user.sh
 RUN chmod +x /usr/local/bin/init-user.sh

base_images/2i2c/pangeo/environment.yml

@@ -6,9 +6,9 @@ dependencies:
   - icu=78.2
   - nodejs=22.22.0
   - rustac=0.9.9
-  - pip=26.0.1
+  - pip=26.1.1
   - pip:
-    - rio-tiler==8.0.5
+    - rio-tiler==9.0.6
     - maap-py==4.2.0
     - maap-algorithms-jupyter-extension==0.5.1
     - maap-jupyter-server-extension==3.0.0

base_images/2i2c/pytorch/docker/Dockerfile

@@ -1,4 +1,4 @@
-FROM quay.io/pangeo/pytorch-notebook:2025.12.30
+FROM quay.io/pangeo/pytorch-notebook:2026.04.29
 ENV LANG=en_US.UTF-8
 ENV TZ=US/Pacific
 ARG DEBIAN_FRONTEND=noninteractive

base_images/2i2c/pytorch/environment.yml

@@ -6,7 +6,7 @@ dependencies:
   # Dependencies for VS Code IDE
   - code-server>=3.2
   - jupyter-vscode-proxy=0.7
-  - pre_commit=3.4.0
+  - pre_commit
   # Upgrade from py torch notebook image
   - earthaccess>=0.16.0
   # Pin down to avoid https://github.com/holoviz/pyviz_comms/issues/143

base_images/2i2c/r-base/docker/Dockerfile

@@ -1,4 +1,4 @@
-FROM ghcr.io/nmfs-opensci/container-images/py-rocket-geospatial-2:2026.01.25
+FROM ghcr.io/nmfs-opensci/container-images/py-rocket-geospatial-2:2026.02.18
 ENV LANG=en_US.UTF-8
 ENV TZ=US/Pacific
 ARG DEBIAN_FRONTEND=noninteractive
@@ -9,34 +9,38 @@ USER root
 # R will be completely separate from conda
 RUN apt-get clean && apt-get update && \
     apt-get install -y --no-install-recommends \
-    gdal-bin=3.8.4+dfsg-3ubuntu3 \
-    lbzip2=2.5-2.3 \
-    libfftw3-dev=3.3.10-1ubuntu3 \
-    libgdal-dev=3.8.4+dfsg-3ubuntu3 \
-    libgeos-dev=3.12.1-3build1 \
-    libgl1-mesa-dev=25.0.7-0ubuntu0.24.04.2 \
-    libglu1-mesa-dev=9.0.2-1.1build1 \
-    libhdf4-alt-dev=4.2.16-4build1 \
-    libhdf5-dev=1.10.10+repack-3.1ubuntu4 \
-    libjq-dev=1.7.1-3ubuntu0.24.04.1 \
-    libpq-dev=16.11-0ubuntu0.24.04.1 \
-    libproj-dev=9.4.0-1build2 \
-    libprotobuf-dev=3.21.12-8.2ubuntu0.2 \
-    libnetcdf-dev=1:4.9.2-5ubuntu4 \
-    libsqlite3-dev=3.45.1-1ubuntu2.5 \
-    libssl-dev=3.0.13-0ubuntu3.6 \
-    libudunits2-dev=2.2.28-7build1 \
-    netcdf-bin=1:4.9.2-5ubuntu4 \
-    postgis=3.4.2+dfsg-1ubuntu3 \
-    protobuf-compiler=3.21.12-8.2ubuntu0.2 \
-    sqlite3=3.45.1-1ubuntu2.5 \
-    tk-dev=8.6.14build1 \
-    unixodbc-dev=2.3.12-1ubuntu0.24.04.1 && \
+    gdal-bin \
+    lbzip2 \
+    libfftw3-dev \
+    libgdal-dev \
+    libgeos-dev \
+    libgl1-mesa-dev \
+    libglu1-mesa-dev \
+    libhdf4-alt-dev \
+    libhdf5-dev \
+    libjq-dev \
+    libpq-dev \
+    libproj-dev \
+    libprotobuf-dev \
+    libnetcdf-dev \
+    libsqlite3-dev \
+    libssl-dev \
+    libudunits2-dev \
+    netcdf-bin \
+    postgis \
+    protobuf-compiler \
+    sqlite3 \
+    tk-dev \
+    unixodbc-dev && \
     apt-get clean && \
     rm -rf /var/lib/apt/lists/*
 
 USER ${NB_USER}
 
+# Use sharded repodata for faster resolve times 
+RUN conda install --name base 'conda-libmamba-solver>=25.11.0' -y
+RUN conda config --set plugins.use_sharded_repodata true
+
 # Install additional packages from environment.yml
 COPY ./environment.yml /tmp
 RUN conda env update -n ${CONDA_ENV} -f "/tmp/environment.yml" \
@@ -47,6 +51,14 @@ RUN conda env update -n ${CONDA_ENV} -f "/tmp/environment.yml" \
 RUN conda init
 
 USER root
+
+# Set default CRAN mirror to use pre-built binaries from Posit Package Manager
+RUN R_HOME=$(R RHOME) && \
+    echo "options(repos = c(CRAN = 'https://packagemanager.posit.co/cran/__linux__/noble/latest'))" >> "$R_HOME/etc/Rprofile.site"
+
+# Install pak for better package management
+RUN Rscript -e "install.packages('pak', repos = sprintf('https://r-lib.github.io/p/pak/devel/%s/%s/%s', .Platform\$pkgType, R.Version()\$os, R.Version()\$arch))"
+
 SHELL ["/bin/bash", "-c"]
 ADD . /
 RUN ["chmod", "+x", "/scripts/install_cran_packages_r.sh"]

base_images/2i2c/r-base/environment.yml

@@ -4,12 +4,18 @@ channels:
   - nodefaults
 dependencies:
   # Python packages only - NO R packages in conda
-  - gdal=3.10.2
-  - nodejs=20.19.5
+  - gdal>=3.12.2
+  - nodejs>=20.20.2
+  - pdal>=2.8.4 
+  - py-xgboost=3.2.0
+  - python>=3.12.0  
+  - qgis>=3.44.7
+  - rclone=1.74.0
   - rtree=1.4.1 
+  - sqlite>=3.45
   - unzip=6.0
-  - pip=26.0
+  - pip=26.1.1
   - pip:
     # - git+https://github.com/MAAP-Project/stac_ipyleaflet.git@0.3.6
-    - morecantile==6.1.0
-    - rio-tiler==7.2.2
+    - morecantile==7.0.3
+    - rio-tiler==9.0.6