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Refactor cli.py #1

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Refactor cli.py #1

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f35448d
Refactor cli.py for clarity and maintainability
google-labs-jules[bot] Nov 15, 2025
fcb33c9
Refactor cli.py for clarity and maintainability
google-labs-jules[bot] Nov 15, 2025
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906 changes: 264 additions & 642 deletions cli.py
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3 changes: 0 additions & 3 deletions comp_rpkm
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2 changes: 1 addition & 1 deletion envs/vamb_branch_master_commit_latest.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -7,5 +7,5 @@ dependencies:
- python==3.9.0
- pip
- pip:
- -e /maps/projects/rasmussen/scratch/ptracker/Benchmark_vamb_cli/bin/vamb_branch_master_commit_latest
- -e /app/bin/vamb_branch_master_commit_latest
name: vamb_env_latest
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