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Added unittest for data types (scanpy, pandas, scipy) #170

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Merged
bjoaofelipe merged 6 commits into from
Oct 27, 2025
Merged

Added unittest for data types (scanpy, pandas, scipy) #170

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eb9cfcf
Added unittest for data types (scanpy, pandas, scipy)
Oct 27, 2025
dd82cbc
Added 3d unittests
Oct 27, 2025
75ecd39
Linted tests
Oct 27, 2025
c46d6df
Version update
Oct 27, 2025
88aaf07
Change linter version to python 3.12
Oct 27, 2025
d018acf
Linted test_datatypes
Oct 27, 2025
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2 changes: 1 addition & 1 deletion .github/workflows/run_tests.yml
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Expand Up @@ -21,7 +21,7 @@ jobs:
fail-fast: false
matrix:
config:
- {name: 'current', os: ubuntu-latest, python: '3.9' }
- {name: 'current', os: ubuntu-latest, python: '3.12' }

steps:
- uses: actions/checkout@v4
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6 changes: 3 additions & 3 deletions Python/README.md
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Expand Up @@ -28,7 +28,7 @@ To see how PHATE can be applied to datasets such as facial images and single-cel

[Moon, van Dijk, Wang, Gigante et al. **Visualizing Transitions and Structure for Biological Data Exploration**. 2019. *Nature Biotechnology*.](https://doi.org/10.1038/s41587-019-0336-3)

PHATE has been implemented in [Python >=3.5](#python), [MATLAB](https://github.com/KrishnaswamyLab/PHATE/#matlab) and [R](https://github.com/KrishnaswamyLab/phateR/).
PHATE has been implemented in [Python >=3.9](#python), [MATLAB](https://github.com/KrishnaswamyLab/PHATE/#matlab) and [R](https://github.com/KrishnaswamyLab/phateR/).

### Table of Contents

Expand All @@ -42,15 +42,15 @@ PHATE has been implemented in [Python >=3.5](#python), [MATLAB](https://github.c
### System Requirements

* Windows (>= 7), Mac OS X (>= 10.8) or Linux
* [Python >= 3.5](https://www.python.org/downloads/)
* [Python >= 3.9](https://www.python.org/downloads/)

All other software dependencies are installed automatically when installing PHATE.

### Installation with `pip`

The Python version of PHATE can be installed by running the following from a terminal:

pip install --user phate
pip install phate

Installation of PHATE and all dependencies should take no more than five minutes.

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