Ci setup

.github/workflows/cpp_test.yml

@@ -0,0 +1,59 @@
+name: C++ tests
+
+on:
+  push:
+    paths:
+      - include/**
+      - src_core/**
+      - tests/**
+      - CMakeLists.txt
+      - .github/workflows/cpp_test.yml
+  pull_request:
+    paths:
+      - include/**
+      - src_core/**
+      - tests/**
+      - CMakeLists.txt
+      - .github/workflows/cpp_test.yml
+
+jobs:
+  test-fast:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          r-version: 'release'
+
+      - name: Configure
+        run: cmake -B build -DCMAKE_BUILD_TYPE=Release
+
+      - name: Build
+        run: cmake --build build --target test_core --parallel
+
+      - name: Test
+        run: ctest --test-dir build --output-on-failure
+
+  test-full:
+    if: github.ref == 'refs/heads/main' || startsWith(github.ref, 'refs/tags/')
+    runs-on: ${{ matrix.os }}
+    strategy:
+      fail-fast: false
+      matrix:
+        os: [ubuntu-latest, macos-latest, windows-latest]
+    steps:
+      - uses: actions/checkout@v4
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          r-version: 'release'
+
+      - name: Configure
+        run: cmake -B build -DCMAKE_BUILD_TYPE=Release
+
+      - name: Build
+        run: cmake --build build --target test_core --parallel
+
+      - name: Test
+        run: ctest --test-dir build --output-on-failure

.github/workflows/python.yml

@@ -3,25 +3,46 @@ name: Python package
 on:
   push:
     paths:
-      - "py_package/**"
-      - ".github/workflows/python.yml"
+      - py_package/**
+      - .github/workflows/python.yml
   pull_request:
     paths:
-      - "py_package/**"
-      - ".github/workflows/python.yml"
+      - py_package/**
+      - .github/workflows/python.yml
 
 jobs:
-  test:
+  test-fast:
     runs-on: ubuntu-latest
     strategy:
       matrix:
         python-version: ["3.11", "3.12"]
+    steps:
+      - uses: actions/checkout@v4
+
+      - uses: actions/setup-python@v5
+        with:
+          python-version: ${{ matrix.python-version }}
+
+      - name: Install package
+        run: |
+          python -m pip install --upgrade pip
+          python -m pip install ./py_package[dev]
+
+      - name: Run tests
+        run: pytest py_package/tests
 
+  test-full:
+    if: github.ref == 'refs/heads/main' || startsWith(github.ref, 'refs/tags/')
+    runs-on: ${{ matrix.os }}
+    strategy:
+      fail-fast: false
+      matrix:
+        os: [ubuntu-latest, macos-latest, windows-latest]
+        python-version: ["3.11", "3.12"]
     steps:
       - uses: actions/checkout@v4
 
-      - name: Set up Python
-        uses: actions/setup-python@v5
+      - uses: actions/setup-python@v5
         with:
           python-version: ${{ matrix.python-version }}
 

.github/workflows/r_check.yml

@@ -0,0 +1,68 @@
+name: R package check
+
+on:
+  push:
+    paths:
+      - R/**
+      - src/**
+      - man/**
+      - inst/**
+      - DESCRIPTION
+      - NAMESPACE
+      - Makefile
+      - .github/workflows/r_check.yml
+  pull_request:
+    paths:
+      - R/**
+      - src/**
+      - man/**
+      - inst/**
+      - DESCRIPTION
+      - NAMESPACE
+      - .github/workflows/r_check.yml
+
+jobs:
+  test-fast:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          r-version: "release"
+
+      - name: Sync headers
+        run: make r-sync-headers
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::rcmdcheck, any::tinytest
+
+      - uses: r-lib/actions/check-r-package@v2
+        with:
+          error-on: '"error"'
+
+  test-full:
+    if: github.ref == 'refs/heads/main' || startsWith(github.ref, 'refs/tags/')
+    runs-on: ${{ matrix.os }}
+    strategy:
+      fail-fast: false
+      matrix:
+        os: [ubuntu-latest, macos-latest, windows-latest]
+    steps:
+      - uses: actions/checkout@v4
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          r-version: "release"
+
+      - name: Sync headers
+        run: make r-sync-headers
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::rcmdcheck, any::tinytest
+
+      - uses: r-lib/actions/check-r-package@v2
+        with:
+          error-on: '"error"'

Makefile

@@ -4,6 +4,7 @@ r-doc:
 	Rscript -e "devtools::document()"
 
 r-sync-headers:
+	mkdir -p inst/include
 	cp include/*.hpp inst/include/
 
 r-build: r-sync-headers r-doc

src_core/MultisetMedian.cpp

@@ -1,6 +1,7 @@
 #include "MultisetMedian.hpp"
 #include <iterator>
 #include <limits>
+#include <stdexcept>
 
 MultisetMedian::MultisetMedian(std::size_t size) : window_size_(size) {
   if (size <= 0) {

src_core/SlidingWelford.cpp

@@ -1,4 +1,5 @@
 #include "SlidingWelford.hpp"
+#include <stdexcept>
 
 SlidingWelford::SlidingWelford(std::size_t window_size)
     : window_size_(window_size), mean_(0.0), M2_(0.0) {

src_core/SlidingWelfordRing.cpp

@@ -1,4 +1,5 @@
 #include "SlidingWelfordRing.hpp"
+#include <stdexcept>
 
 SlidingWelfordRing::SlidingWelfordRing(std::size_t window_size)
     : window_size_(window_size), mean_(0.0), M2_(0.0) {