Fix shuffle misalignment#58
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… and splitting Signed-off-by: Basak Bahcivanci <basakbahcivanci@gmail.com>
…essing and splitting Signed-off-by: Basak Bahcivanci <basakbahcivanci@gmail.com>
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This pull request fixes an index misalignment bug where the target column in
transformed_model_target_data.csvcould become out of sync with condition_binary(original target) in the metadata after shuffling/splitting.Changes:
autoxai4omics/utils/ml/data_split.pyReset indices after train/test split to ensure targets remain correctly aligned with features and metadata.
autoxai4omics/utils/ml/preprocessing.pyUpdated to preserve index consistency.
autoxai4omics/utils/ml/class_balancing.pyReplaced direct imports (
from numpy import ndarray,from pandas.core.frame import DataFrame) withimport numpy as npand ”import pandas as pddue to error. Improved error messages to show actual received types for easier debugging. Allowed y_train as a pd.Series (for labels).autoxai4omics/omics/tabular.pyAllowed y to be kept as Series with SampleID index.
autoxai4omics/utils/save.pyUpdated to preserve consistent indices
autoxai4omics/models/tabauto/keras_model.py,autoxai4omics/models/tabauto/lgbm_model.py,autoxai4omics/models/tabauto/xgboost_model.pyUpdated model wrappers to correctly handle input/target arrays with consistent indices, preventing downstream Errors and misaligned labels.