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test(dada): end-to-end tests for dada-pseudo and multi-input dada (#19) CI #117: Commit 83a8cf0 pushed by cjfields
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test(dada): end-to-end tests for dada-pseudo and multi-input dada (#19) Docker #118: Commit 83a8cf0 pushed by cjfields
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feat(dada): multi-input dada + dada-pseudo pseudo-pooling (#19) CI #116: Commit afd14c4 pushed by cjfields
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feat(dada): multi-input dada + dada-pseudo pseudo-pooling (#19) Docker #117: Commit afd14c4 pushed by cjfields
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feat(benchmark): add --pool {true,false} per-sample vs pooled mode Docker #116: Commit 3bbc498 pushed by cjfields
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feat(benchmark): add --pool {true,false} per-sample vs pooled mode CI #115: Commit 3bbc498 pushed by cjfields
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fix(benchmark): thread filter/primers/bimera to match R's multithreading CI #114: Commit 220fc77 pushed by cjfields
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fix(benchmark): thread filter/primers/bimera to match R's multithreading Docker #115: Commit 220fc77 pushed by cjfields
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chore(benchmark): drop dead REPO variable Docker #114: Commit a1cf03d pushed by cjfields
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chore(benchmark): drop dead REPO variable CI #113: Commit a1cf03d pushed by cjfields
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chore(cli): order subcommands by workflow position in --help Docker #113: Commit 188e229 pushed by cjfields
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chore(cli): order subcommands by workflow position in --help CI #112: Commit 188e229 pushed by cjfields
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feat(benchmark): add PacBio primer removal to mirror R workflow Docker #112: Commit e7b94f4 pushed by cjfields
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feat(benchmark): add PacBio primer removal to mirror R workflow CI #111: Commit e7b94f4 pushed by cjfields
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fix(benchmark): pass --kmer-size to PacBio learn-errors step too Docker #111: Commit 81cbeec pushed by cjfields
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fix(benchmark): pass --kmer-size to PacBio learn-errors step too CI #110: Commit 81cbeec pushed by cjfields
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Docker Docker #110: by cjfields
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feat(scripts): add compare_asvs.py for A/B (baseline-vs-many) ASV com… Docker #109: Commit 94e74a8 pushed by cjfields
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feat(scripts): add compare_asvs.py for A/B (baseline-vs-many) ASV com… CI #109: Commit 94e74a8 pushed by cjfields
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docs(kmer): PacBio churn cascade — final tables ~99.7% k-invariant (c… Docker #108: Commit 04b9b6d pushed by cjfields
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docs(kmer): PacBio churn cascade — final tables ~99.7% k-invariant (c… CI #108: Commit 04b9b6d pushed by cjfields
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docs(kmer): rename notes to kmer_size_screening.md (covers both platf… Docker #107: Commit 6616173 pushed by cjfields
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docs(kmer): rename notes to kmer_size_screening.md (covers both platf… CI #107: Commit 6616173 pushed by cjfields
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docs(kmer): chimera removal collapses the churn — final Illumina tabl… Docker #106: Commit a1077f1 pushed by cjfields
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docs(kmer): chimera removal collapses the churn — final Illumina tabl… CI #106: Commit a1077f1 pushed by cjfields
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