ClockBase

ClockBase is a web application for analyzing and visualizing biological age predictions from DNA methylation data and RNA-Seq data. It provides an interface to upload datasets, view predictions, and explore metadata associated with GEO Series.

Run

To run the application locally, follow these steps:

1. Clone the repository:

   git clone https://github.com/Gladyshev-Lab/clockbase
   cd clockbase

2. Navigate to the frontend directory, and install dependencies:

   cd ../frontend
   npm install

3. Build frontend assets:

   npm run build

4. Open new terminal and navigate to the backend directory and install dependencies:

   cd backend
   uv venv .venv -p 3.13
   source .venv/bin/activate  # On Windows use `.venv\Scripts\activate`
   uv pip install -r requirements.txt

5. Start the server:

   uv uvicorn main:app --host 0.0.0.0 --port 8009

6. Open your web browser and navigate to http://localhost:8009 to access the application.