v0.3.2.post1

What's Changed

• [Update] UV/Ruff to replace package managing by @skim0119 in #518
• [Fixed] burst detection by @Qixian-Wang in #517
• [Refactor] Redesign core by @skim0119 in #500

New Contributors

• @Qixian-Wang made their first contribution in #517

Full Changelog: v0.3.0.post14...v0.3.2.post1

Beta Release v0.3.0-beta.0

Release Note v0.3.0-beta.0

What's Changed

• Major rework in core operators and datatypes @skim0119 in #204
  • Includes pipeline, lazy generator runs, caching, and callback
• Underlying structure implementation is done. The remaining work is left to test and try on various experimental procedures.
• Reduced documentation to only includes the pages that support the current operator structure.

Full Changelog: https://github.com/GazzolaLab/MiV-OS/commits/v0.3.0-beta.0

Release Version 0.2.4

Release Note (version 0.2.4)

What's Changed

Features

• Dynamic Time Warping for sorting and clustering by @skim0119 in #181
• Make load_fragments to be default behavior for load by @eunice-chan in #190
• Add more features for miv.core.Spikestamps: time-window view, first/last spikestamps, and spike counter

Documentation

• update raw-binary file pre-processing by @skim0119 in #191
• Update read_TTL_events guide by @skim0119 in #187
• how to use change-point detection algorithm by @skim0119 in #193

New Contributors

• @eunice-chan made their first contribution in #190

Full Changelog: v0.2.3...V0.2.4

Release version 0.2.3

Release Note (version 0.2.3)

What's Changed

Features

• Intan RHS data load module by @skim0119 in #179
• Support fragment load for large file size.
• MiV native miv.Spikestamps datatime with extended 'merge' feature.
• Support for OpenEphys version 0.5.4 file structure.
• Add array type return for spiketrain during spikedetection.
• Add spike_amplitude_to_background_noise statistics.
• New protocol for Data module prot

Minor

• bug: zero spikerate
• docs: update on SNR tools
• test: unittests on SNR features
• test: unittests on BSA coding module
• test: unittests on arduino module
• test: unittests on StimJim module
• test: unittests on geometry protocol
• test: unittests on OE TTL event readout
• test: more unittests on butter-bandpass module
• git-action: use python-action cache for poetry
• git-action: remove windows test with cache

Dependencies

• deprecated: removed h5py_cache
• pyseries -> pyserial dependency

Full Changelog: v0.2.2...v0.2.3

Release version 0.2.2

What's Changed

• Import binary raw file by @skim0119 in #116
• Include reverse capability for stimjim
• Documentation Update

Bug Fix

• Binned Spiketrain algorithm now includes counting
• Fix bug in synchronizing timestamps for TTL event recording
• Update dependencies and fix related issues

Full Changelog: v0.2.1...v0.2.2

Release version 0.2.1

What's Changed

• Test Cases + Bug fix binned_spiketrain by @Gauravu2 in #93
• Shift documentation theme to PyData by @skim0119 in #94
• Initial implementation of MiV HDF5-based data format by @iraikov in #90
• TTL event readout from OpenEphys dataset by @skim0119 in #99
• Add core datatypes: SpikeTrain by @skim0119 in #102
• Setup dependabot by @skim0119 in #103
• build(deps-dev): bump flake8 from 4.0.1 to 5.0.4 by @dependabot in #107
• build(deps): bump codecov/codecov-action from 2 to 3 by @dependabot in #105
• build(deps): bump actions/setup-python from 2.2.2 to 4.2.0 by @dependabot in #104
• build(deps-dev): bump pylint from 2.14.5 to 2.15.0 by @dependabot in #111
• Update 0.2.1 by @skim0119 in #112

New Contributors

• @iraikov made their first contribution in #90
• @dependabot made their first contribution in #107

Full Changelog: v0.2.0...v0.2.1

Release version 0.2.0

What's Changed

• Connectivity visualization by @Gauravu2 in #82
• Audio encoding (Lyon's Ear Model + BSA) by @skim0119 in #91
• Update Tests

Full Changelog: v0.1.2...v0.2.0

Release version 0.1.2

What's Changed

• Fano factor by @Gauravu2 in #67
• Feature automatic channel masking by @jihugo in #56
• Connectivity: Spike triggered average plot by @Gauravu2 in #71
• Multi channel signal replay over MEA geometry (#24, #59) by @armantekinalp in #66
• Refactor: remove poetry redundancies (#74) by @bhosale2 in #75
• Update tests by @skim0119 in #78

New Contributors

• @jihugo made their first contribution in #56
• @bhosale2 made their first contribution in #75

Full Changelog: v0.1.1...v0.1.2

Release version 0.1.1

What's Changed

• Patch CONTRIBUTING.md guideline by @skim0119 in #55
• Statistics: PSTH implementation by @armantekinalp in #57
• Connectivity guide update by @Gauravu2 in #53
• Burst analysis for a single channel and plotting across channels by @Gauravu2 in #60
• Information Theory Module by @Gauravu2 in #63

Full Changelog: v0.1.0...v0.1.1

Release version 0.1.0

Release Note (version 0.1.0)

Developer Note

What's Changed

• Update: Sample dataset and web-installation utilities by @skim0119 in #39
• Statistics: Inter-spike interval histogram and statistics documentation by @armantekinalp in #44
• Connectivity - documentation on cross correlation and pattern detection using cell assembly by @Gauravu2 in #42

New Contributors

• @Gauravu2 made their first contribution in #42

Full Changelog: v0.0.6...v0.1.0